Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001096-TA|BGIBMGA001096-PA|IPR006210|EGF,
IPR006209|EGF-like, IPR013111|EGF, extracellular, IPR001258|NHL
repeat, IPR006530|YD repeat, IPR011044|Quinoprotein amine
dehydrogenase, beta chain-like, IPR009072|Histone-fold,
IPR013032|EGF-like region, IPR001209|Ribosomal protein S14,
IPR000742|EGF-like, type 3
         (2969 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...   101   1e-22
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       90   2e-19
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    29   0.63 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   5.9  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    25   7.8  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
            protein protein.
          Length = 585

 Score =  101 bits (241), Expect = 1e-22
 Identities = 93/304 (30%), Positives = 126/304 (41%), Gaps = 51/304 (16%)

Query: 878  CPNG-CSGKGECLMGHCQCQPGFGGDDCSKSV--CPVLCSQRG----EYING-ECQCNPG 929
            C NG C   G      C C  G+ G  C   +  C     Q G    + I    C+C  G
Sbjct: 156  CNNGTCEDIGNS--HRCHCSDGYSGSYCQTEINECDSAPCQNGGTCLDLIGSYSCKCPKG 213

Query: 930  WKGKECSLRHDECEVPDCNGHGHC---VNG-KCSCVRGYKGKFCGEI---DCPHPTCSGH 982
            ++G+ C L  D+C+   C   G C   VN   CSC  G  G  C EI   DC    C  +
Sbjct: 214  FQGQNCELNVDDCKPNPCQNGGTCHDLVNSFSCSCPSGTLGYIC-EINVDDCRPGACHNN 272

Query: 983  GFCIEGT----CVCKKGWKGADCGTMDKDALQCLPD-CSGHGTFD----VDTQTCSCHAK 1033
            G C++      C C  G+ G  C   + D  +CL + CS  GT D    V+   C+C   
Sbjct: 273  GTCLDKVGGFECKCPPGFVGPRC---EGDINECLSNPCSNAGTLDCVQLVNDYHCNCKLG 329

Query: 1034 WSGEDCSKEV--CSLE-CGPHGRC----VGESCSCAAGWSGEFC--SVRLCDAR-CAEHG 1083
            + G  C  +V  C+   C   G C     G  C+C  G+ G+ C  S   CD+  C   G
Sbjct: 330  FMGRHCESKVNFCATSPCQNGGVCTTIHAGHKCTCPEGFYGKNCEFSGYDCDSNPCQNGG 389

Query: 1084 QCK--NG---TCLCVSGWNGRHC---TLEGCPRSCAGH--GQCRVDNDGRWECKCFDGWD 1133
             C+  +G    C C SG NG +C   T+  C  +   H    C+ D  G + C C     
Sbjct: 390  VCRISDGGGYICDCPSGTNGTNCEIDTINECDSNPCKHLDAICQ-DKLGDYACYCPPKHT 448

Query: 1134 GPDC 1137
            G +C
Sbjct: 449  GKNC 452



 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 84/309 (27%), Positives = 123/309 (39%), Gaps = 50/309 (16%)

Query: 918  EYING-ECQCNPGWKGKECSLRHDECEVPDCNGHGHCVNG----KCSCVRGYKGKFC-GE 971
            +Y++   C C  G+ G  C    ++C    C   G C++G     C+C  G+ G  C   
Sbjct: 2    QYVDSYTCTCPLGFSGINCQTNDEDCTETSCMNGGTCIDGINSYICTCKPGFTGSNCQNR 61

Query: 972  ID-CPHPTCSGHGFCIEG----TCVCKKGWKGADCGTMDKDALQCLPDCSGHGTF--DVD 1024
            I+ C    C     C +     TC C  G+ G DCG    D     P C    T   + +
Sbjct: 62   INLCDSSPCLNGATCQDHTTHYTCHCPYGYTGKDCGEY-VDWCSTNP-CENQATCVQNKN 119

Query: 1025 TQTCSCHAKWSGEDCSKEVCSLE-------------CGPHGRC--VGES--CSCAAGWSG 1067
               C C   W+G+ C  E+ S +             C  +G C  +G S  C C+ G+SG
Sbjct: 120  QYQCLCGVGWTGKVCDVEMVSCKDAALRKVVPLKKLCN-NGTCEDIGNSHRCHCSDGYSG 178

Query: 1068 EFCSVRL--CD-ARCAEHGQC----KNGTCLCVSGWNGRHCTL--EGC-PRSCAGHGQCR 1117
             +C   +  CD A C   G C     + +C C  G+ G++C L  + C P  C   G C 
Sbjct: 179  SYCQTEINECDSAPCQNGGTCLDLIGSYSCKCPKGFQGQNCELNVDDCKPNPCQNGGTCH 238

Query: 1118 VDNDGRWECKCFDGWDGPDCTTLKEQICDDSRDN-----DKDGLVDCEDPECCQSPACKS 1172
             D    + C C  G  G  C    +     +  N     DK G  +C+ P     P C+ 
Sbjct: 239  -DLVNSFSCSCPSGTLGYICEINVDDCRPGACHNNGTCLDKVGGFECKCPPGFVGPRCEG 297

Query: 1173 S-QLCVSSP 1180
                C+S+P
Sbjct: 298  DINECLSNP 306



 Score = 90.2 bits (214), Expect = 2e-19
 Identities = 74/270 (27%), Positives = 105/270 (38%), Gaps = 37/270 (13%)

Query: 924  CQCNPGWKGKECSLRHDECEVPDCNGHGHCVN----GKCSCVRGYKGKFC--GEIDCPHP 977
            C C+ G+ G  C    +EC+   C   G C++      C C +G++G+ C     DC   
Sbjct: 170  CHCSDGYSGSYCQTEINECDSAPCQNGGTCLDLIGSYSCKCPKGFQGQNCELNVDDCKPN 229

Query: 978  TCSGHGFCIE----GTCVCKKGWKGADCGTMDKDALQCLPD-CSGHGTF--DVDTQTCSC 1030
             C   G C +     +C C  G  G  C     D   C P  C  +GT    V    C C
Sbjct: 230  PCQNGGTCHDLVNSFSCSCPSGTLGYICEINVDD---CRPGACHNNGTCLDKVGGFECKC 286

Query: 1031 HAKWSGEDCSKEV--C-SLECGPHGR--CV----GESCSCAAGWSGEFCS--VRLC-DAR 1078
               + G  C  ++  C S  C   G   CV       C+C  G+ G  C   V  C  + 
Sbjct: 287  PPGFVGPRCEGDINECLSNPCSNAGTLDCVQLVNDYHCNCKLGFMGRHCESKVNFCATSP 346

Query: 1079 CAEHGQCKN----GTCLCVSGWNGRHCTLEG--CPRS-CAGHGQCRVDNDGRWECKCFDG 1131
            C   G C        C C  G+ G++C   G  C  + C   G CR+ + G + C C  G
Sbjct: 347  CQNGGVCTTIHAGHKCTCPEGFYGKNCEFSGYDCDSNPCQNGGVCRISDGGGYICDCPSG 406

Query: 1132 WDGPDCTTLKEQICDDSRDNDKDGLVDCED 1161
             +G +C       CD +     D +  C+D
Sbjct: 407  TNGTNCEIDTINECDSNPCKHLDAI--CQD 434



 Score = 86.2 bits (204), Expect = 3e-18
 Identities = 82/307 (26%), Positives = 119/307 (38%), Gaps = 57/307 (18%)

Query: 864  ISFVALVAEEMTHNCPN-GCSGKGECLMGH----CQCQPGFGGDDCSK--SVC---PVL- 912
            + F  +  +    +C    C   G C+ G     C C+PGF G +C    ++C   P L 
Sbjct: 13   LGFSGINCQTNDEDCTETSCMNGGTCIDGINSYICTCKPGFTGSNCQNRINLCDSSPCLN 72

Query: 913  -CSQRGEYINGECQCNPGWKGKECSLRHDECEVPDCNGHGHCVNGK----CSCVRGYKGK 967
              + +    +  C C  G+ GK+C    D C    C     CV  K    C C  G+ GK
Sbjct: 73   GATCQDHTTHYTCHCPYGYTGKDCGEYVDWCSTNPCENQATCVQNKNQYQCLCGVGWTGK 132

Query: 968  FCGEIDCPHPTCSGHGFCIEGTCVCKKGWKGADCGTMDKDALQCLPDCSGHGTFDVDTQT 1027
             C   D    +C      +      KK      C  +                   ++  
Sbjct: 133  VC---DVEMVSCK--DAALRKVVPLKKLCNNGTCEDIG------------------NSHR 169

Query: 1028 CSCHAKWSGEDCSKEV--C-SLECGPHGRC---VGE-SCSCAAGWSGEFCSVRLCDAR-- 1078
            C C   +SG  C  E+  C S  C   G C   +G  SC C  G+ G+ C + + D +  
Sbjct: 170  CHCSDGYSGSYCQTEINECDSAPCQNGGTCLDLIGSYSCKCPKGFQGQNCELNVDDCKPN 229

Query: 1079 -CAEHGQC----KNGTCLCVSGWNGRHC--TLEGC-PRSCAGHGQCRVDNDGRWECKCFD 1130
             C   G C     + +C C SG  G  C   ++ C P +C  +G C +D  G +ECKC  
Sbjct: 230  PCQNGGTCHDLVNSFSCSCPSGTLGYICEINVDDCRPGACHNNGTC-LDKVGGFECKCPP 288

Query: 1131 GWDGPDC 1137
            G+ GP C
Sbjct: 289  GFVGPRC 295


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 89.8 bits (213), Expect = 2e-19
 Identities = 54/165 (32%), Positives = 79/165 (47%), Gaps = 22/165 (13%)

Query: 856 NDDGDPQEISFVALVAEEMTHNCPNGCSGKGECL----MGH-CQCQPGFGGDDCSKSV-- 908
           N   D +  S +A+      ++ P+ C   G C+    +GH CQCQPGF G  C +++  
Sbjct: 12  NPPCDDEVESCIAVGVGSGRNSAPSICGEHGHCVNLPGVGHRCQCQPGFTGKYCHENIND 71

Query: 909 CPVLCSQRG----EYING-ECQCNPGWKGKECSLRHDECEVPDCNGHGHCVNG----KCS 959
           C V   + G    + IN  +C C  GW+G  C++  D+C    C  +G CV+     +C+
Sbjct: 72  CKVNPCENGGTCVDKINAFQCICKEGWEGALCNINTDDCSPNPCRNNGSCVDRIADFECN 131

Query: 960 CVRGYKGKFCGEID--CPHPTCSGHGFCIE----GTCVCKKGWKG 998
           C  G+KGK C   D  C H TC   G C +      C C   W+G
Sbjct: 132 CKNGWKGKTCSLKDSHCDHTTCKNGGTCQDLGKTFMCRCPPDWEG 176



 Score = 79.8 bits (188), Expect = 3e-16
 Identities = 49/158 (31%), Positives = 68/158 (43%), Gaps = 19/158 (12%)

Query: 901  GDDCSKSVCPVLCSQRGEYIN-----GECQCNPGWKGKECSLRHDECEVPDCNGHGHCVN 955
            G    ++  P +C + G  +N       CQC PG+ GK C    ++C+V  C   G CV+
Sbjct: 26   GVGSGRNSAPSICGEHGHCVNLPGVGHRCQCQPGFTGKYCHENINDCKVNPCENGGTCVD 85

Query: 956  G----KCSCVRGYKGKFC--GEIDCPHPTCSGHGFCIEG----TCVCKKGWKGADCGTMD 1005
                 +C C  G++G  C     DC    C  +G C++      C CK GWKG  C    
Sbjct: 86   KINAFQCICKEGWEGALCNINTDDCSPNPCRNNGSCVDRIADFECNCKNGWKGKTCSL-- 143

Query: 1006 KDALQCLPDCSGHGTF-DV-DTQTCSCHAKWSGEDCSK 1041
            KD+      C   GT  D+  T  C C   W G   S+
Sbjct: 144  KDSHCDHTTCKNGGTCQDLGKTFMCRCPPDWEGTTLSQ 181



 Score = 79.0 bits (186), Expect = 5e-16
 Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 21/162 (12%)

Query: 1022 DVDTQTCSCHAKWSGEDCSKEVCSLECGPHGRCV-----GESCSCAAGWSGEFCSVRLCD 1076
            D + ++C      SG + +  +C    G HG CV     G  C C  G++G++C   + D
Sbjct: 16   DDEVESCIAVGVGSGRNSAPSIC----GEHGHCVNLPGVGHRCQCQPGFTGKYCHENIND 71

Query: 1077 AR---CAEHGQCKNGT----CLCVSGWNGRHCTL--EGC-PRSCAGHGQCRVDNDGRWEC 1126
             +   C   G C +      C+C  GW G  C +  + C P  C  +G C VD    +EC
Sbjct: 72   CKVNPCENGGTCVDKINAFQCICKEGWEGALCNINTDDCSPNPCRNNGSC-VDRIADFEC 130

Query: 1127 KCFDGWDGPDCTTLKEQICDDSRDNDKDGLVDCEDPECCQSP 1168
             C +GW G  C +LK+  CD +   +     D      C+ P
Sbjct: 131  NCKNGWKGKTC-SLKDSHCDHTTCKNGGTCQDLGKTFMCRCP 171



 Score = 58.8 bits (136), Expect = 5e-10
 Identities = 51/173 (29%), Positives = 69/173 (39%), Gaps = 29/173 (16%)

Query: 933  KECSLRHDECEVPDCNGHGHCVNGKCSCVRGYKGKFCGEIDCPHPTCSGHGFCIE----- 987
            K CS     C+ P C+          SC+    G   G    P   C  HG C+      
Sbjct: 1    KNCSESKAICDNPPCDDEVE------SCIAVGVGS--GRNSAPS-ICGEHGHCVNLPGVG 51

Query: 988  GTCVCKKGWKGADCGTMDKDALQCLPDCSGHGTF--DVDTQTCSCHAKWSGEDCS--KEV 1043
              C C+ G+ G  C     D    +  C   GT    ++   C C   W G  C+   + 
Sbjct: 52   HRCQCQPGFTGKYCHENINDCK--VNPCENGGTCVDKINAFQCICKEGWEGALCNINTDD 109

Query: 1044 CSLE-CGPHGRCVGE----SCSCAAGWSGEFCSVRLCDARCAEHGQCKN-GTC 1090
            CS   C  +G CV       C+C  GW G+ CS++  D+ C +H  CKN GTC
Sbjct: 110  CSPNPCRNNGSCVDRIADFECNCKNGWKGKTCSLK--DSHC-DHTTCKNGGTC 159


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
            candidate 50 protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 1232 VITTLGSGLVGVRVSTSTPLEGFTLTREDGWFDL 1265
            V+ +LGS +V V ++T    +G +++   GW DL
Sbjct: 42   VVLSLGSFIVSVYLTTKIDNDGESISLASGWLDL 75


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 242 SVQPISTMDLSTAVNSVHDISPPSTVSLPHG--VTSTTSAQVS 282
           S  P+ST   S A  S    SP S  + P G   TSTTS  +S
Sbjct: 125 STPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTTSQNLS 167


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
            candidate 35 protein.
          Length = 251

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 2074 WGHVISTDTVPYTILAEIDPILGESYPVPA 2103
            W  ++ST  +  TIL ++D IL ++Y + A
Sbjct: 162  WVGILSTIFLCDTILKKVDDILSQAYKLEA 191


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 702,589
Number of Sequences: 317
Number of extensions: 32312
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 13
length of query: 2969
length of database: 114,650
effective HSP length: 70
effective length of query: 2899
effective length of database: 92,460
effective search space: 268041540
effective search space used: 268041540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)