Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001096-TA|BGIBMGA001096-PA|IPR006210|EGF,
IPR006209|EGF-like, IPR013111|EGF, extracellular, IPR001258|NHL
repeat, IPR006530|YD repeat, IPR011044|Quinoprotein amine
dehydrogenase, beta chain-like, IPR009072|Histone-fold,
IPR013032|EGF-like region, IPR001209|Ribosomal protein S14,
IPR000742|EGF-like, type 3
(2969 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 34 0.35
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 33 0.61
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 33 0.61
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 32 1.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 2.5
SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c... 31 2.5
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 31 3.3
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 31 3.3
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 30 5.7
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 7.5
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr... 29 7.5
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 29 7.5
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 29 9.9
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 29 9.9
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 29 9.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 9.9
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 29 9.9
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 33.9 bits (74), Expect = 0.35
Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 2/156 (1%)
Query: 142 SSRCSWKCTXXXXXXXXXXXXXXXSYMSASYFVNWSYQNSKACTVIVGESTEMFSASKAT 201
SS S + S S+S + S +S + + S+ S+S ++
Sbjct: 138 SSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 197
Query: 202 TLEASNKSLARPHQGSSSSNLGNEQNHSRHRRSVDVEGHASVQPISTMDLSTAVNSVHDI 261
+ +S+ S + P S+SS+ + + S S +S I+TM ST +++V +
Sbjct: 198 SSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSS-SFITTMSSSTFISTV-TV 255
Query: 262 SPPSTVSLPHGVTSTTSAQVSEENGDANAFVSANTG 297
+P S+ S +++A ++ A+ S N G
Sbjct: 256 TPSSSSSSTSSEVPSSTAALALNASKASNHTSLNAG 291
Score = 33.1 bits (72), Expect = 0.61
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 188 VGESTEMFSASKATTLEASNKSLARPHQGSSSSNLGNEQNHSRHRRSVDVEGHASVQPIS 247
V S+ + S +++ S+ S SSSS+ + + S S +S S
Sbjct: 127 VSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 186
Query: 248 TMDLSTAVNSVHDISPPSTVSLPHGVTSTTSAQVSEENGDANAFVSANTGDLTKGSLTT 306
+ S++ +S S S+ S+P +TS+TS+ S + +++ S++ + +TT
Sbjct: 187 SSSSSSSSSSSSSSSSSSSSSVP--ITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITT 243
Score = 30.3 bits (65), Expect = 4.3
Identities = 28/152 (18%), Positives = 59/152 (38%), Gaps = 3/152 (1%)
Query: 180 NSKACTVIVGESTEMFSASKATTLEASNKSLARPHQGSSSSNLGNEQNHSRHRRSVDVEG 239
+S + + S+ +S +TT S S + SSSS+ + + S S
Sbjct: 128 SSSSVSSTTSSSSSSSPSSSSTTTTTSPSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS 186
Query: 240 HASVQPISTMDLSTAVNSVHDISPPSTVSLPHGVTSTTSAQVSEEN--GDANAFVSANTG 297
+S S+ S++ +S + S+ S H +S++S+ S + +++F++ +
Sbjct: 187 SSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSS 246
Query: 298 DLTKGSLTTRDDDKIXXXXXXXXXXXXAINLN 329
++T A+ LN
Sbjct: 247 STFISTVTVTPSSSSSSTSSEVPSSTAALALN 278
Score = 29.1 bits (62), Expect = 9.9
Identities = 25/110 (22%), Positives = 48/110 (43%)
Query: 166 SYMSASYFVNWSYQNSKACTVIVGESTEMFSASKATTLEASNKSLARPHQGSSSSNLGNE 225
S +S++ + S S + T + S+S +++ +S+ S + SSSS+ +
Sbjct: 130 SSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 189
Query: 226 QNHSRHRRSVDVEGHASVQPISTMDLSTAVNSVHDISPPSTVSLPHGVTS 275
+ S S +S PI++ S+ +S S S+ S P +S
Sbjct: 190 SSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSS 239
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 33.1 bits (72), Expect = 0.61
Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 5/164 (3%)
Query: 142 SSRCSWKCTXXXXXXXXXXXXXXXSYMSASYFVNWSYQNSKACTVIVGESTEMFSASKAT 201
SS+ S T SY+S+S V+ S S + + + S+ S+ +T
Sbjct: 184 SSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPST 243
Query: 202 TLEASNKSLARPHQGSSSSNLGNEQNHSRHRRSVDVEGHASVQPISTMDLSTAVNSVHDI 261
+ +S+ S + SSSS+ + S + +S P ST ++ +S
Sbjct: 244 SSSSSSTSSSL----SSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSS- 298
Query: 262 SPPSTVSLPHGVTSTTSAQVSEENGDANAFVSANTGDLTKGSLT 305
SP ST S +S++S+ S + + + S+ + T S T
Sbjct: 299 SPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSST 342
Score = 31.1 bits (67), Expect = 2.5
Identities = 42/230 (18%), Positives = 89/230 (38%), Gaps = 5/230 (2%)
Query: 67 VPSGDIQKNPSMDYKSNSSCSSPGKQDKNTLERMDRGDRAHPAFGAPVPVLPVRNNLRAT 126
+PS + + S+SS SS ++ + + +P ++ ++
Sbjct: 240 IPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSS---SSPTSTSSTISSSSSS 296
Query: 127 HFPPTASRFHFRKGLSSRCSWKCTXXXXXXXXXXXXXXXSYMSASYFVNWSYQNSKACTV 186
PT++ SS S+ T S S+S ++ S + + +
Sbjct: 297 SSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSS-SPTSSSSTISSSSSSPSSSSF 355
Query: 187 IVGESTEMFSASKATTLEASNKSLARPHQGSSSSNLGNEQNHSRHRRSVDVEGHASVQPI 246
S+ S+S ++T+ +S+ + + SSSS+ + S H S+ +S
Sbjct: 356 SSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSS-SRPASSSSHSSSLSSHKSSSSSKS 414
Query: 247 STMDLSTAVNSVHDISPPSTVSLPHGVTSTTSAQVSEENGDANAFVSANT 296
S+ +S+A S S+ S H ++S +S + + + S++T
Sbjct: 415 SSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHT 464
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 33.1 bits (72), Expect = 0.61
Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 7/140 (5%)
Query: 175 NWSYQ-NSKACTVIVGESTEMFSASKATTLEASNK---SLARPHQGSSSSNLGNEQNHSR 230
+W+ + +S A T V S S+S A++ +S++ S A GSS+S++
Sbjct: 927 SWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATASVSGS 986
Query: 231 HRRSVDVEGHASVQPISTMDLSTAVNSVHDISPPSTVSLPHGVTSTTSAQVSEENGDANA 290
SV AS ST ++ A + S +T S+ TS+ + + ++ ++
Sbjct: 987 STSSV---ATASATDSSTSSIAAASVTGSSTSSVATASVTDSSTSSVATASATDSSTSSI 1043
Query: 291 FVSANTGDLTKGSLTTRDDD 310
V++ TG T T D
Sbjct: 1044 AVASVTGSSTSSVATASATD 1063
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 31.9 bits (69), Expect = 1.4
Identities = 41/193 (21%), Positives = 74/193 (38%), Gaps = 16/193 (8%)
Query: 198 SKATTLEASNKSLARPHQGSSSSNLGNEQNHSRHRRSVDVEGHASVQPIS---------- 247
S TT+ + S+ H+G +S+ GN ++HS ++ D ++PIS
Sbjct: 310 SSRTTIRRTGASIRTIHRGKTSTLSGN-RSHSILQKPTDTSPLHKIEPISADELVESDDS 368
Query: 248 -TMDLSTAVNSVHDISPPSTVSLPHGVTSTTSAQVSEENGDANAFVSANTGDLTKGSLTT 306
T LS + N D+ S +L V S T+ +N A+ + T + K ++
Sbjct: 369 RTSALSNSQNPSDDVENQSDQALE--VLSLTNPP-KIDNASADTTLHKETNKIDKLYVSE 425
Query: 307 RDDDKIXXXXXXXXXXXXAINLNENFDNADDVTDKTKPLHVNRLIEIPVFEKSTMATKRE 366
+ A+ +N + + +KP E V KS++ +
Sbjct: 426 NKAESAVASESSLSEGTLALKAPAP-ENKPEKSSTSKPPVPENKAEDSVVLKSSVPEDKS 484
Query: 367 QEDIAYDPDDMQG 379
+ IA P +G
Sbjct: 485 ENSIASKPSATEG 497
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.1 bits (67), Expect = 2.5
Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 11/126 (8%)
Query: 185 TVIVGESTEMFSASKATTLEASNKSLARPHQGSSSSNLGNEQNHSRHRRSVDVEGHA--- 241
T ST + S + T AS+ L + S++S + S V A
Sbjct: 464 TATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSY 523
Query: 242 ---SVQPISTMDLSTAVNSVHDISPPSTVSLP-HGVTSTTSAQVSEE---NGDANAFVSA 294
SV P S++ ST ++S + + S S P V STT+ S N + S
Sbjct: 524 NTSSVLPTSSVS-STPLSSANSTTATSASSTPLTSVNSTTATSASSTPFGNSTITSSASG 582
Query: 295 NTGDLT 300
+TG+ T
Sbjct: 583 STGEFT 588
Score = 29.5 bits (63), Expect = 7.5
Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 5/134 (3%)
Query: 196 SASKATTLEASNKSLARPHQGSSSSNLGNEQNHSRHRRSVDVEGHASVQPISTMDLSTAV 255
++S T+ A++ SLA SSS + + S S+ AS S+ S++
Sbjct: 105 TSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSST 164
Query: 256 NSVHDISPPSTVSLPHGVTSTTSAQVSEENGDANAFVSANTGDLTKGSLTTRDDDKIXXX 315
NS +P S+ + +S+ S+ + + +++ S++ T + T+
Sbjct: 165 NSTTSATPTSSAT-----SSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAAS 219
Query: 316 XXXXXXXXXAINLN 329
+ +LN
Sbjct: 220 NSATSSSLASSSLN 233
>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 50
Score = 31.1 bits (67), Expect = 2.5
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 1028 CSCHAKWSGEDCSKEVCSLECGPHGRCVGESCSCAA 1063
C C +K +DC KE C + C SC CA+
Sbjct: 15 CDCQSKCGCQDC-KESCGCKSSAVDNCKCSSCKCAS 49
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 30.7 bits (66), Expect = 3.3
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Query: 177 SYQNSKACTVIVGESTEMFSASKAT-TLEASNKSLARPHQGSSSSNLGNEQNHSRHRRSV 235
S+ NS A S+ +SA + T AS SL+ SS S G+E N R S
Sbjct: 109 SFSNSAADVSSHSRSSSSWSAKLSRFTKHASKPSLSSNSSDSSFSKSGSESNALSSRGSF 168
Query: 236 DVEGHASVQPISTMD--LSTAVNSVHDISPPSTVS-LPHGVTSTTSAQVSEENGDANA 290
++E H + +S LS + H S+ L V + +++V +ANA
Sbjct: 169 ELEPHGIHRHVSRAKRLLSKFYSKFHHKKEDSSFDPLAPLVFAPNTSRVLRVTNEANA 226
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 398
Score = 30.7 bits (66), Expect = 3.3
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 993 KKGWKGADCGTMDKDALQCLPDCSGHGTFDVDTQTCSCHAKWSGEDCSKEVCSLECGPHG 1052
+K + G C ++ + DCSGHG Q SC+ CS V S G +
Sbjct: 282 EKNYNGR-CYISEEACSKATNDCSGHGRCSKYGQLDSCYVC----QCSNSVVSNAAGQNK 336
Query: 1053 --RCVGESCS 1060
R GESCS
Sbjct: 337 TIRWAGESCS 346
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 29.9 bits (64), Expect = 5.7
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 242 SVQPISTMDLSTAVNSVHDISPPSTVSLPHGVTSTTSAQVSEENGDANAFVSANTGDLTK 301
S ST LS + +SP ST+S + ++ST +A S +NG+++ F S T K
Sbjct: 25 STPSYSTYSLSPTFSDKSVLSP-STMSDSYALSSTYTAGSSYQNGESDYFGSLPTPSSDK 83
Query: 302 GS 303
S
Sbjct: 84 SS 85
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 7.5
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 1070 CSVRLCDARCAEHGQCKNGTCLCVSGWNGRHCTLEGCPRSC-AGHGQCRVDNDGRWECKC 1128
C C+ C G+C++ +C G +C C C AGH C D R CK
Sbjct: 708 CKTHFCEKLCHPDGECES-SCKKECGKRRMYCE-HVCQSPCHAGH-PC----DERIPCKA 760
Query: 1129 FDGWDGPDCTTLKEQI-CDDSRDN-DKDGLVDCEDPECCQ 1166
+C +++++ CD S DN D V C EC Q
Sbjct: 761 -PLEVSCECGRIRKKVTCDASYDNPDPQHKVSC-TLECSQ 798
>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 29.5 bits (63), Expect = 7.5
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 400 ERLREAYQKIHIYNDTVKIDKNLDKFHYDSDNND 433
ER++ + +H+Y+D +++ + L FH D++D
Sbjct: 376 ERMKIYQRTVHVYSDAMRVLQVLKLFHQHKDSDD 409
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 29.5 bits (63), Expect = 7.5
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 4 DYIIVNEKKCKQSCLLEGSRLPPDVPPRNPTISRLNGRITGNPADLADFE 53
DY I+ E K ++ L+ L DVP R +S N R P ++ D E
Sbjct: 1088 DYDILPETKFTRNNLVGVCVLSVDVPNRKVALSARNSRTQSQPVEIKDKE 1137
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 29.1 bits (62), Expect = 9.9
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 2818 KDNSLKIRDDMEELRRLS--GKFNVSQDETNDQGLEVRVHAVGKGSAQAVIVLR 2869
K + +R++++EL + + +SQ DQ L ++ +VG G QAV LR
Sbjct: 643 KTRLMILREELQELDAIKEEAQKQISQSLIADQQLSTQIGSVGMGKKQAVKELR 696
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 29.1 bits (62), Expect = 9.9
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 2385 AKMKFNSKSGLNNAHFKYQYDGNARLSTIDVNINSKEMPQLRLKYNQNLGSLEA 2438
+K N S +NN H + ++++ + +N + P++ LKYN+ SL++
Sbjct: 704 SKSPENYLSSINNGHHALNDNPPSQVNFSETLVNFSQPPRVLLKYNEKKLSLDS 757
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 29.1 bits (62), Expect = 9.9
Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 15/137 (10%)
Query: 166 SYMSASYFVNWSYQNSKACTVIVGESTEMFSASKATTLEASNKSLARPHQGSSSSNLGNE 225
S ++AS Y ++ A + +T +S +TT +S+ S + P S +S++ +
Sbjct: 122 STLAASTISGGIYSSTSASSTSSSTATP---SSSSTTSSSSSSSSSTPISSSITSSISSS 178
Query: 226 QNHSRHRRSVDVEGHASVQPISTMDLSTAVNSVHDISPPSTVSLPHGVTSTTSAQVSEEN 285
+ S S G IS+ D T +S S ++ TSTTSA S
Sbjct: 179 ASSSVSSSSASSSGS-----ISSADAKT-------VSASSNSTISGFSTSTTSASSSAAG 226
Query: 286 GDANAFVSANTGDLTKG 302
+++ ++ +G ++ G
Sbjct: 227 NSSSSSYTSYSGAVSNG 243
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/68 (23%), Positives = 26/68 (38%)
Query: 532 NIAEARTSDVTNPKRVLINLTISADDADSSYKPLYSLTVTVPTVGAPNELPTVKITPMDV 591
N E +T+ ++ + T S + SSY P S + T +V + + TP
Sbjct: 718 NSTEVKTASTSSGTEIKTASTSSGSSSSSSYTPASSTSTTTSSVSSRQSSSSSSFTPSSA 777
Query: 592 EPTQSMKF 599
T F
Sbjct: 778 ISTAKSSF 785
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 29.1 bits (62), Expect = 9.9
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 188 VGESTEMFSASKA---TTLEASNKSLARPHQGSSSSNLGNEQNHSRHRRSVDVEGHASVQ 244
+G +T SAS + T++ AS S+ SSS + + + S S ++
Sbjct: 497 LGTATSYSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSRSGSSSSSSSRSGSTSS 556
Query: 245 PISTMDLSTAVNSVHDISPPSTVSLPHGVTSTTSAQVSEENGDANAFVSAN 295
S+ +++ SVH S ST + VTST + S + ++ SAN
Sbjct: 557 SGSSHTITSTSQSVHT-SGSSTSTSSVAVTSTAYSSSSSSSSSSSIESSAN 606
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.135 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,718,298
Number of Sequences: 5004
Number of extensions: 612753
Number of successful extensions: 1468
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1434
Number of HSP's gapped (non-prelim): 49
length of query: 2969
length of database: 2,362,478
effective HSP length: 86
effective length of query: 2883
effective length of database: 1,932,134
effective search space: 5570342322
effective search space used: 5570342322
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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