Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001095-TA|BGIBMGA001095-PA|undefined
         (63 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)           29   0.41 
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.6  
SB_2978| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   1.6  
SB_22904| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.03)           27   2.2  
SB_19902| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.2  
SB_36880| Best HMM Match : DUF1337 (HMM E-Value=0.54)                  27   2.9  
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.9  
SB_38320| Best HMM Match : SSDP (HMM E-Value=0.34)                     26   3.8  
SB_14999| Best HMM Match : E-MAP-115 (HMM E-Value=0.71)                26   3.8  
SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.0  
SB_13665| Best HMM Match : Collagen (HMM E-Value=0.55)                 25   6.6  
SB_49480| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.6  
SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)                    25   6.6  
SB_17919| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.6  
SB_9235| Best HMM Match : TolA (HMM E-Value=0.33)                      25   6.6  
SB_25055| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.7  
SB_24957| Best HMM Match : Terminase_4 (HMM E-Value=2.7)               25   8.7  
SB_20432| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.7  
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)                     25   8.7  
SB_20371| Best HMM Match : U-box (HMM E-Value=0.075)                   25   8.7  
SB_286| Best HMM Match : M (HMM E-Value=0.39)                          25   8.7  

>SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)
          Length = 671

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 4   ENNTIQLNNREGKAQKKIETGKTQ-TGDKAQNRRGQSDDPVEQLER 48
           E NT+ +N  E    KK E+G+T+ +G KAQ R    +  + ++ +
Sbjct: 461 EENTLNVNALEKLLTKKDESGETERSGSKAQTRDMSKELDISEINK 506


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 16 KAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERARRFIVHLE 57
          K  +K++T  TQT DKA  R  +  + +E  ++A+   +H+E
Sbjct: 37 KENEKLQTNLTQTQDKALRRISEMKETIELEKQAK---MHME 75


>SB_2978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 11  NNREGKAQKKIETGKTQTGDKAQNRRGQSDDP 42
           +N + K  KKIETGKT+  +K       SD P
Sbjct: 113 HNEKQKDDKKIETGKTE--EKTSGEAKNSDTP 142


>SB_22904| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.03)
          Length = 294

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 4   ENNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSD 40
           E N ++   +E K Q++  TG+  TG++    +G  +
Sbjct: 171 EGNALESKTKENKVQEEQGTGEQGTGEQGTGEQGTGE 207


>SB_19902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 4   ENNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSD 40
           E N ++   +E K Q++  TG+  TG++    +G  +
Sbjct: 189 EGNALESKTKENKVQEEQGTGEQGTGEQGTGEQGTGE 225


>SB_36880| Best HMM Match : DUF1337 (HMM E-Value=0.54)
          Length = 367

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 13  REGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERARR 51
           ++GK +KK +    ++GD+ + ++   D+P E+ E  R+
Sbjct: 80  KKGKGKKKKQGDAKESGDEEEGKK--KDEPTEKEEELRK 116


>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 4   ENNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERAR 50
           ENN  +    +GK+Q + +T K  TG +  + + QS    E L++ R
Sbjct: 352 ENNKPRPQTAKGKSQTRPKTAKATTGSEQPSPKMQSLSYDEWLKQKR 398


>SB_38320| Best HMM Match : SSDP (HMM E-Value=0.34)
          Length = 273

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 2   NAENNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERARR 51
           N  NN+   NNR   + K     K  +     NR+ + DD V++ ++  R
Sbjct: 190 NRNNNSDNNNNRSNNSDKNDNRSK-YSNHSYYNRKSEPDDGVKRWKKLSR 238


>SB_14999| Best HMM Match : E-MAP-115 (HMM E-Value=0.71)
          Length = 150

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 3   AENNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERARR 51
           +EN+ ++  NRE + QK +         K + R G+SDD     + AR+
Sbjct: 92  SENDELERENRELENQKPLRERIKAISKKYRYRVGRSDDDRGHCDVARQ 140


>SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 9   QLNNREGKAQKKIETGKTQTGDKAQNRRGQS 39
           Q +N+E K Q+K E GK+   D   N+ G+S
Sbjct: 186 QNDNKEKKRQRK-EVGKSVESDNNDNKGGRS 215


>SB_13665| Best HMM Match : Collagen (HMM E-Value=0.55)
          Length = 515

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)

Query: 5   NNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLER 48
           N   Q N +E    K+   GK Q+  KAQ+   +  +  EQ  R
Sbjct: 401 NGKEQSNGKEQSNGKEQSNGKEQSNGKAQSNGKEQSNGKEQSNR 444



 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 5   NNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQ 45
           N   Q N +E   +K+   GK Q+  KAQ+   +  +  EQ
Sbjct: 431 NGKEQSNGKEQSNRKEQSNGKEQSNGKAQSNGKEQSNGKEQ 471


>SB_49480| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 3  AENNTIQLNNREGKAQKKIET--GKTQTGDKAQNRRGQS 39
          +E ++ ++N ++    KK +T  G+TQ G +  +R GQ+
Sbjct: 5  SETDSTRINVKDMTNVKKDDTRSGQTQAGSRTNSRNGQT 43


>SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)
          Length = 592

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 9   QLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERARRFIVHLER 58
           ++  RE + +KK E  + +   K +  R +      +LER +R     ER
Sbjct: 375 EMKRREEERRKKREEAERERKRKEEEERNREKQEKARLEREKRMREDFER 424


>SB_17919| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 4  ENNTIQLNNREGKAQKKIETGKTQTGDK 31
          E+ T  L N++GK Q+      TQ GD+
Sbjct: 43 EDKTFGLKNKKGKKQQTFVKQVTQQGDR 70


>SB_9235| Best HMM Match : TolA (HMM E-Value=0.33)
          Length = 579

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 5   NNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERA 49
           N  +QL  ++ K  +K E  K +   +    RG S    E+L +A
Sbjct: 361 NRVLQLERKKRKTAEKAEKIKARRAARKAEARGSSAALTERLNKA 405


>SB_25055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 16 KAQKKIETGKTQTGDKAQNRRGQ 38
          + +KKI TG+ Q  D  +NRR +
Sbjct: 70 RGRKKITTGRLQIQDGGRNRRAK 92


>SB_24957| Best HMM Match : Terminase_4 (HMM E-Value=2.7)
          Length = 354

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 16 KAQKKIETGKTQTGDKAQNRRGQ 38
          + +KKI TG+ Q  D  +NRR +
Sbjct: 33 RGRKKITTGRLQIQDGGRNRRAK 55


>SB_20432| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 43  VEQLERARRFIVHLERVWDV 62
           V+++ER  + +VHL   WDV
Sbjct: 348 VDRIERNIKILVHLHPYWDV 367


>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
          Length = 1249

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 17/53 (32%), Positives = 23/53 (43%)

Query: 2   NAENNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERARRFIV 54
           N  N T++L     ++ +    G  Q  DK Q   G   DP E L R   FI+
Sbjct: 865 NTRNLTLELYLVGPQSTQAEIPGWLQFDDKTQTISGLPMDPSETLTRGELFIL 917


>SB_20371| Best HMM Match : U-box (HMM E-Value=0.075)
          Length = 515

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 10  LNNREGKAQKK---IETGKTQTGDKAQN--RRGQSDDPVEQLERARRFIVHLERVWD 61
           ++N   K QK    ++ G   T D A +   R +S D V++L+      VH+ER  D
Sbjct: 295 IDNASAKLQKMKEFVDNGMAATLDIALDLEERKESSDGVKELKDLMAQYVHMEREMD 351


>SB_286| Best HMM Match : M (HMM E-Value=0.39)
          Length = 414

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 2   NAENNTIQLNNREGKAQKKIETGKTQTG 29
           NA+  T++    +G AQ+K   G  Q G
Sbjct: 122 NAQKETLKRERSKGNAQRKRSKGNAQKG 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.311    0.128    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,879
Number of Sequences: 59808
Number of extensions: 73105
Number of successful extensions: 228
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 32
length of query: 63
length of database: 16,821,457
effective HSP length: 42
effective length of query: 21
effective length of database: 14,309,521
effective search space: 300499941
effective search space used: 300499941
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)