Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001095-TA|BGIBMGA001095-PA|undefined
(63 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30980.1 68417.m04397 basic helix-loop-helix (bHLH) family pr... 29 0.39
At1g73830.1 68414.m08548 basic helix-loop-helix (bHLH) family pr... 28 0.67
At1g76820.1 68414.m08939 expressed protein 27 1.6
At3g24140.1 68416.m03031 basic helix-loop-helix (bHLH) family pr... 27 2.1
At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) / t... 27 2.1
At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) / t... 27 2.1
At2g46670.1 68415.m05824 pseudo-response regulator, putative / t... 27 2.1
At5g10030.1 68418.m01162 bZIP family transcription factor (OBF4... 26 2.7
At3g05330.1 68416.m00581 cyclin family low similarity to microtu... 26 3.6
At3g02400.1 68416.m00227 forkhead-associated domain-containing p... 26 3.6
At4g07520.1 68417.m01174 hypothetical protein contains Pfam prof... 25 4.8
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain... 25 4.8
At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal hydrolase-r... 25 4.8
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta... 25 6.3
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta... 25 6.3
At5g25340.1 68418.m03006 expressed protein 25 6.3
At4g28230.1 68417.m04045 expressed protein 25 6.3
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast... 25 6.3
At3g47270.1 68416.m05135 hypothetical protein similar to At2g049... 25 6.3
At3g27860.1 68416.m03474 PWWP domain-containing protein 25 6.3
At2g36340.1 68415.m04460 DNA-binding storekeeper protein-related... 25 6.3
At2g35630.1 68415.m04369 microtubule organization 1 protein (MOR... 25 6.3
At2g24260.1 68415.m02898 basic helix-loop-helix (bHLH) family pr... 25 6.3
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r... 25 6.3
At4g23540.1 68417.m03392 expressed protein probable membrane pro... 25 8.3
At1g59640.2 68414.m06708 basic helix-loop-helix (bHLH) family pr... 25 8.3
At1g59640.1 68414.m06707 basic helix-loop-helix (bHLH) family pr... 25 8.3
>At4g30980.1 68417.m04397 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 310
Score = 29.1 bits (62), Expect = 0.39
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 23 TGKTQTGDKAQNRRGQSDDPVEQLERARR 51
T + QT K + RRGQ+ DP ER RR
Sbjct: 121 TAQPQTKPKVRARRGQATDPHSIAERLRR 149
>At1g73830.1 68414.m08548 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 261
Score = 28.3 bits (60), Expect = 0.67
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 1 MNAENNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERARR 51
+N +T ++R GK K E K + + RRGQ+ D ER RR
Sbjct: 116 INGNISTKNNSSRRGKRSKNREEEKEREVVHVRARRGQATDSHSIAERVRR 166
>At1g76820.1 68414.m08939 expressed protein
Length = 266
Score = 27.1 bits (57), Expect = 1.6
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 3 AENNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDD-PVEQLERAR 50
AE+N I + R+ ++KK + GD+ ++ SD VE +E AR
Sbjct: 124 AEDNDITFSGRKKSSKKKSSSVLASIGDEESSQSKTSDSKSVELVESAR 172
>At3g24140.1 68416.m03031 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 Helix-loop-helix
DNA-binding domain
Length = 414
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 4 ENNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERARRFIVHLER 58
+NN++QL G+ + + T+ K++ +R ++ E++E R + +ER
Sbjct: 150 DNNSVQLRFIGGEEEDRENKNVTKKEVKSKRKRARTSKTSEEVESQRMTHIAVER 204
>At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) /
timing of CAB expression 1-like protein (TL1) identical
to pseudo-response regulator 9 GI:10281000 from
[Arabidopsis thaliana], timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022; contains Pfam
profile PF00072: Response regulator receiver domain;
identical to cDNA timing of CAB expression 1-like
protein GI:9247021
Length = 351
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 11 NNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERARRF 52
+NRE A K++E G T + + ++ P E+ +R+
Sbjct: 254 SNREKAASKEVEAGSQSTNEGIAGQSSSTEKPKEEESAKQRW 295
>At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) /
timing of CAB expression 1-like protein (TL1) identical
to pseudo-response regulator 9 GI:10281000 from
[Arabidopsis thaliana], timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022; contains Pfam
profile PF00072: Response regulator receiver domain;
identical to cDNA timing of CAB expression 1-like
protein GI:9247021
Length = 468
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 11 NNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERARRF 52
+NRE A K++E G T + + ++ P E+ +R+
Sbjct: 371 SNREKAASKEVEAGSQSTNEGIAGQSSSTEKPKEEESAKQRW 412
>At2g46670.1 68415.m05824 pseudo-response regulator, putative /
timing of CAB expression 1-like protein, putative
similar to pseudo-response regulator 9 [Arabidopsis
thaliana] GI:10281000, timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022
Length = 183
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 11 NNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERARRF 52
+NRE A K++E G T + + ++ P E+ +R+
Sbjct: 86 SNREKAASKEVEAGSQSTNEGIAGQSSSTEKPKEEESAKQRW 127
>At5g10030.1 68418.m01162 bZIP family transcription factor (OBF4)
identical to ocs-element binding factor 4 GI:414613 from
[Arabidopsis thaliana]
Length = 364
Score = 26.2 bits (55), Expect = 2.7
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 20 KIETGKTQTGDKAQNRRGQSDDPVEQLERARRFIVHLERVWD 61
KI+ Q + A+ R + V+QLE +R ++HLE+ D
Sbjct: 80 KIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIHLEQELD 121
>At3g05330.1 68416.m00581 cyclin family low similarity to
microtubule-binding protein TANGLED1 [Zea mays]
GI:11228986; contains Pfam profile PF00134: Cyclin,
N-terminal domain
Length = 444
Score = 25.8 bits (54), Expect = 3.6
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 9 QLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERAR 50
Q +RE + K + + QNRR +SD P L+RAR
Sbjct: 157 QQKSREQNPETVSSNIKARRKKEKQNRRSESDSP-PSLQRAR 197
>At3g02400.1 68416.m00227 forkhead-associated domain-containing
protein / FHA domain-containing protein / AT hook
motif-containing protein contains Pfam profiles PF00498:
FHA domain, PF02178: AT hook motif
Length = 585
Score = 25.8 bits (54), Expect = 3.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 4 ENNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLE 47
EN+ RE + +K+ + G ++ DK R G VEQ+E
Sbjct: 420 ENSQDIERERENENEKEAQEGCSERSDKEYERVGGGAKRVEQVE 463
>At4g07520.1 68417.m01174 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 734
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 16 KAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERARR 51
K +KK GK + DK ++ + +DP ++ E ++
Sbjct: 666 KTKKKGRKGKGKCNDKKNEKKKRDEDPEDEDEGGKK 701
>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
protein low similarity to transcription co-repressor
Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1378
Score = 25.4 bits (53), Expect = 4.8
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 8 IQLNNREGKAQKKIETGKTQ-TGDKAQNRRGQSDDPVEQLERA 49
+++ NR+G A ++ K Q TG++A+ R G+ P++ ERA
Sbjct: 832 VEIANRDGVACSAVKPQKEQETGNEAEKRFGK-PIPMDISERA 873
>At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1136
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 1 MNAENNTIQLNNREGKAQKKIETGKTQTGDKAQNR-RGQSDDPVEQLE 47
+N E T++ ++ E + E+G ++ K QN+ D P E L+
Sbjct: 747 VNLELKTVEEDSMEPENALASESGPLESSSKTQNQEEATKDGPAEMLD 794
>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 7 TIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLER 48
T ++ GK K+E G ++ DK RR Q E + R
Sbjct: 385 TYRVTGENGKNMGKLEHGTKESADKLSLRRTQRKISKENVTR 426
>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 7 TIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLER 48
T ++ GK K+E G ++ DK RR Q E + R
Sbjct: 385 TYRVTGENGKNMGKLEHGTKESADKLSLRRTQRKISKENVTR 426
>At5g25340.1 68418.m03006 expressed protein
Length = 208
Score = 25.0 bits (52), Expect = 6.3
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 12 NREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLER 48
+R+ K QK +E + GD+ NR + DD + LER
Sbjct: 116 SRKSK-QKNLERVLPKDGDEVLNRIEEIDDSWDDLER 151
>At4g28230.1 68417.m04045 expressed protein
Length = 402
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 17 AQKKIETGKTQTGDKAQNRRGQSDDPVEQLERARR 51
A + + GKTQTG+K +R +D E+ E +R
Sbjct: 283 ASRYSQMGKTQTGEKDVRKRSLPED--EEKENHKR 315
>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
(ATPC1) identical to SP|Q01908 ATP synthase gamma chain
1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}
Length = 373
Score = 25.0 bits (52), Expect = 6.3
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 3 AENNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLE 47
AE+ +L +EGK + ET +T T D + + + DPV+ L+
Sbjct: 259 AEDEFFRLTTKEGKLTVERETFRTPTADFSPILQFE-QDPVQILD 302
>At3g47270.1 68416.m05135 hypothetical protein similar to At2g04970,
At2g15200, At1g32830, At2g14140, At3g30450, At4g03990,
At5g34895, At2g02200
Length = 671
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 14 EGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLER 48
EG+ +K+ E GK + +K + R S VE+ E+
Sbjct: 383 EGEEEKQEEEGKEEEEEKVEYRDHHSTCNVEETEK 417
>At3g27860.1 68416.m03474 PWWP domain-containing protein
Length = 652
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 17 AQKKIETGKTQTGDKAQNRRG---QSDDPVEQLERA 49
A+K+I GK+ + K +++RG DD +E+ E +
Sbjct: 300 AEKEISNGKSLSSRKRKSKRGLDENDDDGIEKREES 335
>At2g36340.1 68415.m04460 DNA-binding storekeeper protein-related
contains similarity to storekeeper protein [Solanum
tuberosum] gi|14268476|emb|CAC39398; contains PF04504:
Protein of unknown function, DUF573
Length = 414
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 4 ENNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERA 49
+N + ++N K + +G+ +T D + D P E+ ERA
Sbjct: 154 KNESEYVSNENIDQAKDVPSGEPETNDVPCEEQDDRDVPCEEQERA 199
>At2g35630.1 68415.m04369 microtubule organization 1 protein (MOR1)
identical to microtubule organization 1 protein
GI:14317953 from [Arabidopsis thaliana]
Length = 1978
Score = 25.0 bits (52), Expect = 6.3
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 16 KAQKKIETGKTQTGDK---AQNRRGQSDDPVEQLERARRFIVHLE 57
+A KK+ TGK G K +N +S +P E +E A + +E
Sbjct: 552 QASKKVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIE 596
>At2g24260.1 68415.m02898 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 350
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 27 QTGDKAQNRRGQSDDPVEQLERARR 51
Q+ K + RRGQ+ DP ER RR
Sbjct: 133 QSRTKIRARRGQATDPHSIAERLRR 157
>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1136
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 1 MNAENNTIQLNNREGKAQKKIETGKTQTGDKAQNR-RGQSDDPVEQLE 47
+N E T++ ++ E + E G ++ K QN+ D P E L+
Sbjct: 747 VNLELKTVEEDSMEPENALASENGPLESSSKTQNQEEATKDGPAEMLD 794
>At4g23540.1 68417.m03392 expressed protein probable membrane
protein YPL012w, Saccharomyces cerevisiae, PIR2:S59681
Length = 675
Score = 24.6 bits (51), Expect = 8.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 10 LNNREGKAQKKIETGKTQT 28
L NR GK++ K ET ++QT
Sbjct: 567 LENRSGKSKDKEETNESQT 585
>At1g59640.2 68414.m06708 basic helix-loop-helix (bHLH) family
protein
Length = 343
Score = 24.6 bits (51), Expect = 8.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 18 QKKIETGKTQTGDKAQNRRGQSDDPVEQLERARR 51
QKK + T+ + RRGQ+ D ERARR
Sbjct: 122 QKKQQMEPTKDYIHVRARRGQATDSHSLAERARR 155
>At1g59640.1 68414.m06707 basic helix-loop-helix (bHLH) family
protein
Length = 264
Score = 24.6 bits (51), Expect = 8.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 18 QKKIETGKTQTGDKAQNRRGQSDDPVEQLERARR 51
QKK + T+ + RRGQ+ D ERARR
Sbjct: 122 QKKQQMEPTKDYIHVRARRGQATDSHSLAERARR 155
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.311 0.128 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,486,858
Number of Sequences: 28952
Number of extensions: 45926
Number of successful extensions: 159
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 27
length of query: 63
length of database: 12,070,560
effective HSP length: 43
effective length of query: 20
effective length of database: 10,825,624
effective search space: 216512480
effective search space used: 216512480
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 51 (24.6 bits)
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