GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001095-TA|BGIBMGA001095-PA|undefined
         (63 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    32   0.011
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    26   0.71 
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    24   2.2  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    24   2.9  
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    24   2.9  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    23   3.8  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    23   3.8  
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    23   3.8  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    23   5.0  
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    23   5.0  
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    23   6.6  
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    23   6.6  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    22   8.8  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    22   8.8  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    22   8.8  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    22   8.8  
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    22   8.8  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 31.9 bits (69), Expect = 0.011
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 1    MNAENNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLE 47
            ++ EN   +LN   G  + ++ET K+++ D  +N R Q+   +EQLE
Sbjct: 1327 VSKENLIEELNQEIGHLKSELETVKSKSED-LENERAQNQSKIEQLE 1372


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 0.71
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 35  RRGQSDDPVEQLERARRFIVHLERVWDVP 63
           R+ + +D V  L+ ARR     ERV+ VP
Sbjct: 123 RQYEDEDMVNGLQYARRLRTQFERVYPVP 151


>SPCC417.09c |||transcription factor |Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 767

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 22 ETGKTQTG-DKAQNRRGQSDDPVEQLERARRFI 53
          ETGK   G  K + RRG+   P +++ +A  ++
Sbjct: 52 ETGKKSAGGSKPKRRRGERIPPSKRIRKAIAYV 84


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 4   ENNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLE 47
           E + + LN  + +  + +E   +Q G   Q +  Q+DD +E L+
Sbjct: 429 EQSNVLLNQYDARV-RTLENELSQAGVNLQEQIHQNDDLIESLK 471


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 14/51 (27%), Positives = 22/51 (43%)

Query: 1   MNAENNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERARR 51
           +  E   ++LN  E    K+ +       +K       S D VEQL +AR+
Sbjct: 148 LRKEQPGLRLNQYEDIMYKEFQKHPDNPFNKMNVSYNTSQDEVEQLRKARK 198


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 41  DPVEQLERARRFIVHLER 58
           D V+ LERA +  +HL+R
Sbjct: 470 DDVDSLERALKLAMHLQR 487


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 5   NNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERARRFIV 54
           N  +++NN+ G     IE G   +    ++    SD PV  +     ++V
Sbjct: 67  NGQVKVNNQIGNVDTLIENGYIVSHHAHRHEPPVSDQPVGIVHEDESYVV 116


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 407

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 18 QKKIETGKTQTGDKAQNRRGQSD 40
          QKKI+T K  TG +  N +   D
Sbjct: 19 QKKIKTKKKATGQQTSNTKNLRD 41


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 18/57 (31%), Positives = 21/57 (36%)

Query: 3   AENNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERARRFIVHLERV 59
           AEN TI    +   AQ  I   +TQ  D         D     LER +     LE V
Sbjct: 299 AENKTISYEEKLSIAQNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETV 355


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 11  NNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERARRFIVHL 56
           N  E ++   ++ G T+      +R      P+E + RA RFI+ +
Sbjct: 115 NVAELRSTTNVKAGVTKAVPNVHDRVLTISGPLENVVRAYRFIIDI 160


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 3   AENNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQ 38
           A+    Q  NR  + + + + G+   G  A NRRG+
Sbjct: 80  AKQQAQQRENRGSRFRGRGQRGRGNYGHTAPNRRGR 115


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 3   AENNTI--QLNNREGKAQKKIETGKTQT 28
           A+N  +  + NN   KAQ KI T K  T
Sbjct: 105 ADNEIVDWKANNSNEKAQNKIATNKEST 132


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 6   NTIQLNNREGKAQKKIET 23
           ++  L NREG+A+K + T
Sbjct: 482 DSTNLTNREGEAEKTLNT 499


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 13/50 (26%), Positives = 19/50 (38%)

Query: 2   NAENNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERARR 51
           ++ NNT Q N     +          T     N   + D P+ Q ER +R
Sbjct: 410 SSNNNTNQSNASNENSPNAPSAANDNTETTTVNPPQEDDQPMTQHERDQR 459


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 10/42 (23%), Positives = 18/42 (42%)

Query: 9   QLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERAR 50
           +LN ++GK    +  G  +     +N     D   EQ  +A+
Sbjct: 165 KLNEQDGKKSDNLRNGVNKVKQNMRNGASARDQAREQGSKAK 206


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 4   ENNTIQLNNREGKAQKKIETGK 25
           E + ++L  R  K QK++ TG+
Sbjct: 214 ERDELELRKRTRKVQKEVPTGE 235


>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 416

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 8  IQLNNREGKAQKKIETGKTQTGDKAQNRRGQ 38
          +QL N+   A+   E G T   D  + R+GQ
Sbjct: 38 VQLRNKLQLAEFDFENGLTSHTDLVKMRQGQ 68


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.128    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 284,328
Number of Sequences: 5004
Number of extensions: 8313
Number of successful extensions: 29
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 17
length of query: 63
length of database: 2,362,478
effective HSP length: 43
effective length of query: 20
effective length of database: 2,147,306
effective search space: 42946120
effective search space used: 42946120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 45 (22.2 bits)