GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001095-TA|BGIBMGA001095-PA|undefined
         (63 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30973-4|CAA83220.3|  431|Caenorhabditis elegans Hypothetical pr...    27   1.2  
Z81041-9|CAJ55253.1|  824|Caenorhabditis elegans Hypothetical pr...    27   2.2  
Z81041-8|CAB02784.1|  829|Caenorhabditis elegans Hypothetical pr...    27   2.2  
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr...    27   2.2  
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ...    27   2.2  
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ...    27   2.2  
Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical pr...    26   2.9  
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q...    26   3.8  
U42438-8|AAF99867.2|  368|Caenorhabditis elegans Homolog of yeas...    25   5.0  
AF105010-1|AAD16893.1|  368|Caenorhabditis elegans LAG1Ce-1 prot...    25   5.0  
U27312-6|AAA68250.1|  512|Caenorhabditis elegans Hypothetical pr...    25   6.6  

>Z30973-4|CAA83220.3|  431|Caenorhabditis elegans Hypothetical
           protein B0284.1 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 10/45 (22%), Positives = 25/45 (55%)

Query: 4   ENNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLER 48
           E N + + N++ +AQ+K+ + K +  +K   +  ++   +E L +
Sbjct: 145 EENVVDMKNKKAEAQEKLHSEKKEYDEKKLQKSEENALKIEDLHK 189


>Z81041-9|CAJ55253.1|  824|Caenorhabditis elegans Hypothetical
           protein C27A7.1b protein.
          Length = 824

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 5   NNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDP 42
           + TI +N+   K + KI+T KT T      R+  S DP
Sbjct: 420 DTTISVNDVVDKFRCKIDTVKTNTRSDVPTRKHYSRDP 457


>Z81041-8|CAB02784.1|  829|Caenorhabditis elegans Hypothetical
           protein C27A7.1a protein.
          Length = 829

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 5   NNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDP 42
           + TI +N+   K + KI+T KT T      R+  S DP
Sbjct: 425 DTTISVNDVVDKFRCKIDTVKTNTRSDVPTRKHYSRDP 462


>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
            protein.
          Length = 1651

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 2    NAENNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERARR 51
            N E    +      + +K  E  K Q  +  ++RR Q D+P EQ+    R
Sbjct: 1515 NYEREMFEKEENFQRIEKNQEEEKDQEMNYEESRREQDDEPTEQVAIVER 1564


>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 6, isoform
            a protein.
          Length = 1650

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 2    NAENNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERARR 51
            N E    +      + +K  E  K Q  +  ++RR Q D+P EQ+    R
Sbjct: 1515 NYEREMFEKEENFQRIEKNQEEEKDQEMNYEESRREQDDEPTEQVAIVER 1564


>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 6, isoform
            c protein.
          Length = 1651

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 2    NAENNTIQLNNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERARR 51
            N E    +      + +K  E  K Q  +  ++RR Q D+P EQ+    R
Sbjct: 1515 NYEREMFEKEENFQRIEKNQEEEKDQEMNYEESRREQDDEPTEQVAIVER 1564


>Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical
           protein K08E3.4 protein.
          Length = 643

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 1   MNAENNTIQLNNREGKAQK--KIETGKTQTGDKAQNRRGQSDDPV 43
           MN E    Q   +E +AQK  + ET + +  D    +   SD PV
Sbjct: 319 MNEEEQRRQAEEKEAQAQKQKEFETDRKRIADDLHGKAQISDKPV 363


>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 85
           protein.
          Length = 2203

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 26  TQTGDKAQNR-RGQSDDPVEQLERARRFIVHLERVWDVP 63
           T TG + + R RG  DD  E L+R  + I  +E+   +P
Sbjct: 560 TDTGRRGRRRGRGSDDDEDELLQRDLKLIEEMEKGVKLP 598


>U42438-8|AAF99867.2|  368|Caenorhabditis elegans Homolog of yeast
           longevity geneprotein 1 protein.
          Length = 368

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 25  KTQTGDKAQNRRGQSDDPVEQLERARR 51
           +T TG +A++ R  SD   ++ E ARR
Sbjct: 300 RTSTGGQAKDVRSDSDSDYDEEEMARR 326


>AF105010-1|AAD16893.1|  368|Caenorhabditis elegans LAG1Ce-1
           protein.
          Length = 368

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 25  KTQTGDKAQNRRGQSDDPVEQLERARR 51
           +T TG +A++ R  SD   ++ E ARR
Sbjct: 300 RTSTGGQAKDVRSDSDSDYDEEEMARR 326


>U27312-6|AAA68250.1|  512|Caenorhabditis elegans Hypothetical
          protein F26A1.3 protein.
          Length = 512

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 6/43 (13%)

Query: 11 NNREGKAQKKIETGKTQTGDKAQNRRGQSDDPVEQLERARRFI 53
          ++RE K  KK    KT T  K+++ +GQS  PVE  E+ + FI
Sbjct: 31 DDRETKTSKK----KT-TKPKSKSNKGQSPAPVES-EKDKSFI 67


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.311    0.128    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,561,516
Number of Sequences: 27539
Number of extensions: 49270
Number of successful extensions: 171
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 11
length of query: 63
length of database: 12,573,161
effective HSP length: 43
effective length of query: 20
effective length of database: 11,388,984
effective search space: 227779680
effective search space used: 227779680
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 51 (24.6 bits)