GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001095-TA|BGIBMGA001095-PA|undefined
         (63 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   1.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    19   4.6  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    18   8.1  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    18   8.1  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    18   8.1  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    18   8.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 1.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 4    ENNTIQLNNREGKAQKKIETGKT 26
            +N ++ L   EG  +  +ET KT
Sbjct: 1066 DNTSLALPKNEGPFRLNVETAKT 1088


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 18  QKKIETGKTQTGDKAQNRRGQSDDP 42
           +++  +G T +GD   +R   S  P
Sbjct: 539 RRRANSGSTSSGDDELHRASLSKTP 563


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)

Query: 5   NNTIQLNNREGKAQ 18
           NNTI  NN   K Q
Sbjct: 309 NNTIHNNNNYKKLQ 322


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)

Query: 5   NNTIQLNNREGKAQ 18
           NNTI  NN   K Q
Sbjct: 320 NNTIHNNNNYKKLQ 333


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)

Query: 5   NNTIQLNNREGKAQ 18
           NNTI  NN   K Q
Sbjct: 320 NNTIHNNNNYKKLQ 333


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)

Query: 5   NNTIQLNNREGKAQ 18
           NNTI  NN   K Q
Sbjct: 309 NNTIHNNNNYKKLQ 322


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.128    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,065
Number of Sequences: 429
Number of extensions: 568
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 63
length of database: 140,377
effective HSP length: 43
effective length of query: 20
effective length of database: 121,930
effective search space:  2438600
effective search space used:  2438600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.6 bits)
S2: 35 (18.2 bits)