Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001094-TA|BGIBMGA001094-PA|undefined
         (77 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56230| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.099
SB_33615| Best HMM Match : PA (HMM E-Value=9e-16)                      25   8.6  

>SB_56230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 996

 Score = 31.5 bits (68), Expect = 0.099
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 7/74 (9%)

Query: 10  RGRFGAHFPFNFGFITS--VDGRSNARDFVYV----IKQWLVYMPHGNVANWV-VWIGWE 62
           RG +GA +P + G  TS   D  +N R+++       +QW  + P   + ++    +G+ 
Sbjct: 272 RGVYGAAYPLHEGLSTSYPTDSSANHREYLQYSWASFRQWYRFQPLNEIKSYFGTRVGFY 331

Query: 63  TGFKGKYNVIYLLS 76
             + G YN++ +++
Sbjct: 332 FAWLGTYNLMLVIA 345


>SB_33615| Best HMM Match : PA (HMM E-Value=9e-16)
          Length = 629

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 39 VIKQWLVYMPHGNVANWVVWIGW 61
          ++  +L Y P G V  W+V++ +
Sbjct: 40 LVSPFLAYAPSGTVEGWLVYVNY 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.328    0.146    0.510 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,155
Number of Sequences: 59808
Number of extensions: 99899
Number of successful extensions: 165
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 2
length of query: 77
length of database: 16,821,457
effective HSP length: 55
effective length of query: 22
effective length of database: 13,532,017
effective search space: 297704374
effective search space used: 297704374
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)