GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001094-TA|BGIBMGA001094-PA|undefined
         (77 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    23   3.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    23   6.4  
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    22   8.5  

>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 44  LVYMPHGNVANW 55
           LV +PH  VANW
Sbjct: 608 LVIVPHATVANW 619


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 7/11 (63%), Positives = 10/11 (90%)

Query: 3   MLYYGDERGRF 13
           +LYYGDE+G +
Sbjct: 493 LLYYGDEQGMY 503


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
          exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 44 LVYMPHGNVANWVVW 58
          LV++P G +A W  W
Sbjct: 66 LVFVPIGLIAGWFEW 80


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.328    0.146    0.510 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 411,096
Number of Sequences: 5004
Number of extensions: 14807
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 3
length of query: 77
length of database: 2,362,478
effective HSP length: 57
effective length of query: 20
effective length of database: 2,077,250
effective search space: 41545000
effective search space used: 41545000
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)