GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001094-TA|BGIBMGA001094-PA|undefined
         (77 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0187 - 23094816-23095466                                         27   1.9  
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610...    26   3.3  
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128...    26   3.3  
04_01_0336 - 4414227-4414608,4414690-4414841,4414931-4415029,441...    26   4.4  
03_02_0757 - 10940993-10941112,10941218-10941418,10941661-109417...    25   5.9  
09_04_0015 + 13777383-13777621,13777887-13777972,13778094-137782...    25   7.7  
09_02_0176 + 5376868-5377205,5377703-5378831                           25   7.7  
08_02_0897 - 22362136-22363698                                         25   7.7  
04_03_0967 + 21318974-21319140,21321677-21321821,21322045-213221...    25   7.7  

>05_05_0187 - 23094816-23095466
          Length = 216

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 14  GAHFPFNFGFITSVDGRSNARDFVYVIKQWLVYMPHGNVAN 54
           G H   N+  +T+V   +       V++ ++V +PHGN A+
Sbjct: 144 GEHRLSNYRSVTTVHETAAGAAAAVVVESYVVDVPHGNTAD 184


>10_02_0167 -
           6100676-6102111,6102174-6102708,6102967-6103975,
           6104006-6105036
          Length = 1336

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 8/30 (26%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 41  KQWLVYMPHGNVANWV-VWIGWETGFKGKY 69
           + WL+++P  ++++W  +W  +   F+G Y
Sbjct: 240 RSWLMHLPPYSISSWADLWQQFVANFQGTY 269


>04_01_0123 -
           1283197-1283292,1283330-1284439,1284790-1285177,
           1285523-1287609
          Length = 1226

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 8/30 (26%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 41  KQWLVYMPHGNVANWV-VWIGWETGFKGKY 69
           + WL+++P  ++++W  +W  +   F+G Y
Sbjct: 490 RSWLMHLPPYSISSWADLWQQFVANFQGTY 519


>04_01_0336 -
           4414227-4414608,4414690-4414841,4414931-4415029,
           4415131-4415340
          Length = 280

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 27  VDGRSNARDFVYVIKQWLVYMPHGNVANWVVWIGWETGFKGKY 69
           V GR + +  +Y I    +Y+P     ++++  G+  GF GK+
Sbjct: 113 VGGRLSYKPPIYDINAPDLYIPFMAFGSFIILAGFTLGFMGKF 155


>03_02_0757 -
           10940993-10941112,10941218-10941418,10941661-10941795,
           10941948-10942088,10942214-10942405,10942624-10942748,
           10942828-10942903,10943024-10943173,10943467-10943856,
           10944078-10944227,10944430-10944710,10945034-10945230,
           10945836-10946035,10946422-10946469,10946566-10946688,
           10946771-10946882,10946988-10947103,10947526-10947660
          Length = 963

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 4   LYYGDERGRFGAHFPFNFGFITSVDGRSNARDFVYVIKQW 43
           + + D   R GAH  F+   +     + +  DF+Y  K+W
Sbjct: 468 MVHPDVDTRVGAHHMFSAVIVQGPSRQRSESDFLYETKKW 507


>09_04_0015 +
           13777383-13777621,13777887-13777972,13778094-13778208,
           13778380-13778680
          Length = 246

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 3   MLYYGDERGRFGAHFPFNFGFITSVDG 29
           +L++G  +GRF  + PF   F T+V G
Sbjct: 203 LLFFGYVKGRFTGNRPFISAFQTAVIG 229


>09_02_0176 + 5376868-5377205,5377703-5378831
          Length = 488

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 15  AHFPFNFGFITSVDGRSNARDFVYVIKQWLVYMPHGNVAN 54
           A +P N G    V    NAR+  Y+  +W +  P  N+ N
Sbjct: 339 AKYPLNLGLGNPV--LKNAREVPYLPSRWCIANPAQNLDN 376


>08_02_0897 - 22362136-22363698
          Length = 520

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 31  SNARDFVYVIKQWLVYMPHGNVANWVVWIGW 61
           S   +F +++ + L+     NV +W+ W+ W
Sbjct: 210 STLSEFKWMLDELLLLNGVLNVGDWIPWVDW 240


>04_03_0967 +
           21318974-21319140,21321677-21321821,21322045-21322164,
           21322261-21322395,21322503-21322564,21322804-21322879,
           21323555-21323656,21323732-21323848,21324403-21324461,
           21324927-21325101,21325233-21325367,21325429-21325545,
           21325686-21325794,21325939-21326051,21326561-21326615,
           21326657-21326769
          Length = 599

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 24  ITSVDGRSNARDFVYVIKQWL 44
           + S DG    +DFV ++K+WL
Sbjct: 245 LKSKDGSRVCKDFVSLVKEWL 265


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.328    0.146    0.510 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,858
Number of Sequences: 37544
Number of extensions: 93014
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 9
length of query: 77
length of database: 14,793,348
effective HSP length: 56
effective length of query: 21
effective length of database: 12,690,884
effective search space: 266508564
effective search space used: 266508564
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)