GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001094-TA|BGIBMGA001094-PA|undefined
         (77 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97405-11|AAB53004.1|  672|Caenorhabditis elegans Hypothetical p...    25   6.4  
AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical ...    25   8.4  

>U97405-11|AAB53004.1|  672|Caenorhabditis elegans Hypothetical
           protein T09B4.1 protein.
          Length = 672

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 43  WLVYMPHGNVANWVVWIGWETGFKGKYNVIYLLSY 77
           W  +   G +  +V    W+ G++GK   IY+L Y
Sbjct: 623 WQYFESPGILPFFVFRRVWQDGWRGKLLYIYILGY 657


>AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical
           protein Y39A1B.2 protein.
          Length = 1003

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 13  FGAHFPFNFGFITSVDGRSNARDFVYVI 40
           F AH  +NF    ++DG    R+ +Y +
Sbjct: 776 FAAHLAYNFAKGQNMDGSERMRNALYAV 803


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.328    0.146    0.510 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,168,226
Number of Sequences: 27539
Number of extensions: 76784
Number of successful extensions: 148
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 2
length of query: 77
length of database: 12,573,161
effective HSP length: 57
effective length of query: 20
effective length of database: 11,003,438
effective search space: 220068760
effective search space used: 220068760
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 51 (24.6 bits)