GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001094-TA|BGIBMGA001094-PA|undefined
         (77 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transfera...    29   0.37 
At3g48290.1 68416.m05270 cytochrome P450, putative very strong s...    28   0.86 
At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR...    25   4.6  
At3g47730.1 68416.m05200 ABC transporter family protein AbcA, Di...    25   8.0  
At2g44300.1 68415.m05512 lipid transfer protein-related low simi...    25   8.0  

>At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 490

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 34  RDFVYVIKQWLVYMPHGNVANWVVWIGWETGFKGKYNVI 72
           + F++VI++W  Y   G++ANW+   G+E   K +  VI
Sbjct: 312 KPFIWVIREWGKY---GDLANWMQQSGFEERIKDRGLVI 347


>At3g48290.1 68416.m05270 cytochrome P450, putative very strong
           similarity to Cytochrome P450 71A24
           (SP:Q9STK9)[Arabidopsis thaliana];
          Length = 488

 Score = 27.9 bits (59), Expect = 0.86
 Identities = 10/40 (25%), Positives = 21/40 (52%)

Query: 29  GRSNARDFVYVIKQWLVYMPHGNVANWVVWIGWETGFKGK 68
           G+++ +D +  + + L     G+  +W+ WI W  G  G+
Sbjct: 193 GKTDFKDLMKRLTRLLGEFSVGSYVSWLAWIDWIRGLDGQ 232


>At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1127

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 13   FGAHFPFNFGFITSVDGRSN 32
            F  +FPFN  F T +DG+ N
Sbjct: 1033 FDCYFPFNEEFTTFLDGQFN 1052


>At3g47730.1 68416.m05200 ABC transporter family protein AbcA,
           Dictyostelium discoideum, DDU66526
          Length = 983

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 21  FGFITSVDGRSNARDFVYVIKQWLVYMPHGNVANWVVWIGWE 62
           FGF+  +      ++    ++Q +  M   + A W+ W+ WE
Sbjct: 238 FGFVLQISSLITEKELK--LRQAMTMMGVFDTAYWLSWLTWE 277


>At2g44300.1 68415.m05512 lipid transfer protein-related low
           similarity to lipid transfer protein Picea abies
           GI:2627141; contains Pfam profile: PF00234: Protease
           inhibitor/seed storage/LTP family
          Length = 204

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)

Query: 20  NFGFITSVDGRSNARDFVYVIKQWL 44
           N G  TSV GR++A+ F    KQWL
Sbjct: 165 NSGRTTSVPGRNHAQSF---YKQWL 186


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.328    0.146    0.510 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,093
Number of Sequences: 28952
Number of extensions: 79842
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 5
length of query: 77
length of database: 12,070,560
effective HSP length: 57
effective length of query: 20
effective length of database: 10,420,296
effective search space: 208405920
effective search space used: 208405920
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 51 (24.6 bits)