Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001093-TA|BGIBMGA001093-PA|IPR003698|Lipoate synthase,
IPR007197|Radical SAM, IPR006638|Elongator protein 3/MiaB/NifB
         (366 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   2.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   4.6  
AY563109-1|AAS99587.1|   46|Tribolium castaneum aristaless protein.    22   8.0  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 56  GKLKREKGESERLRLPPWLKTTIPTGSKFNEIKQQLRSLKLSTVC 100
           G L+  KG  +  + PP     IP G   N +  +   ++   +C
Sbjct: 425 GILRYAKGPYQPSQAPPTYDYGIPQGVVLNPLDARCNEIRPDAIC 469


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 14/60 (23%), Positives = 14/60 (23%)

Query: 100 CEEARCPNIGECWSGGKHGASTATIMLMGDTCTRGCMFCSVKTSRNPPPLDPEEPRNTAH 159
           C E  C N G C  G      T      G  C      C      N           T H
Sbjct: 27  CTETSCMNGGTCIDGINSYICTCKPGFTGSNCQNRINLCDSSPCLNGATCQDHTTHYTCH 86


>AY563109-1|AAS99587.1|   46|Tribolium castaneum aristaless protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 6/21 (28%), Positives = 15/21 (71%)

Query: 264 PDLITKSSIMLGLGETDAQVE 284
           PD+ T+  + + +G T+A+++
Sbjct: 22  PDVFTREELAMKIGLTEARIQ 42


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.135    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,197
Number of Sequences: 317
Number of extensions: 3408
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 366
length of database: 114,650
effective HSP length: 58
effective length of query: 308
effective length of database: 96,264
effective search space: 29649312
effective search space used: 29649312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)