Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001093-TA|BGIBMGA001093-PA|IPR003698|Lipoate synthase,
IPR007197|Radical SAM, IPR006638|Elongator protein 3/MiaB/NifB
(366 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0096 - 22777684-22777797,22778668-22779047,22779162-227793... 386 e-107
01_06_0849 + 32433429-32433743,32433840-32434021,32434235-324343... 373 e-103
05_06_0043 + 25143513-25143866,25144010-25144191,25144284-251443... 311 5e-85
11_06_0251 - 21707953-21708455,21709230-21710284,21711187-21711299 31 1.1
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 31 1.1
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 31 1.9
01_05_0361 + 21377080-21377281,21378619-21378705,21379862-213801... 31 1.9
01_01_0466 + 3444444-3445256 31 1.9
12_01_1041 - 10711362-10711428,10711571-10712262,10712622-107127... 30 3.4
11_01_0143 + 1177220-1177462,1177727-1177855,1178114-1178170,117... 29 5.9
07_03_1745 - 29176951-29178901,29178960-29179069,29179536-29179547 29 5.9
03_06_0441 - 33961268-33961633 29 5.9
01_06_0316 - 28419072-28419373,28419405-28420502,28420600-28420819 29 5.9
02_04_0591 - 24159654-24160155,24160233-24160316,24160898-241609... 29 7.8
>04_04_0096 -
22777684-22777797,22778668-22779047,22779162-22779373,
22780119-22780561
Length = 382
Score = 386 bits (951), Expect = e-107
Identities = 178/289 (61%), Positives = 225/289 (77%), Gaps = 1/289 (0%)
Query: 71 PPWLKTTIPTGSKFNEIKQQLRSLKLSTVCEEARCPNIGECWSGGKHGASTATIMLMGDT 130
P W+K TIP G+K+ IK +LR LKL TVCEEARCPN+GECWSGG+ G +TATIM++GDT
Sbjct: 83 PKWMKETIPGGAKYAGIKAKLRELKLHTVCEEARCPNLGECWSGGETGTATATIMILGDT 142
Query: 131 CTRGCMFCSVKTSRNPPPLDPEEPRNTAHAINHWGVGYIVLTSVDRDDLPDGGSLHFAET 190
CTRGC FC+VKTSR PPP DP+EP N A AI WG+ YIV+TSVDRDDLPD GS HFAET
Sbjct: 143 CTRGCRFCNVKTSRTPPPPDPDEPSNVAQAIASWGLEYIVITSVDRDDLPDQGSGHFAET 202
Query: 191 VKEIKKLNKDILVECLVPDFRAVRGCVARVASSGLDVFAHNVETVERLTPFVRDPRAGYR 250
V+++K L ++L+E LVPDFR CV +VA+SGL VFAHN+ETVE L VRD RA ++
Sbjct: 203 VQKLKVLKPEMLIEALVPDFRGDPACVEKVATSGLHVFAHNIETVEELQRNVRDHRANFK 262
Query: 251 QTLKVLQMAKEINP-DLITKSSIMLGLGETDAQVEQTMKDLREAGVDCVTLGQYMQPTKK 309
Q++ VL++AKE P +TK+SIMLG GET QV T + +R AGVD +T GQYM+P+K+
Sbjct: 263 QSIDVLKLAKEYAPAGTLTKTSIMLGCGETPDQVISTTEKVRAAGVDVMTFGQYMRPSKR 322
Query: 310 HLKVFEYVTPARFQQWEARGRQLGFLYVASGALVRSSYRAGEFFISAVL 358
H+ V EYVTP F+++ + G +GF YVASG +VRSSY+AGEF+I A++
Sbjct: 323 HMPVSEYVTPEAFERYRSLGVDMGFRYVASGPMVRSSYKAGEFYIKAMI 371
>01_06_0849 +
32433429-32433743,32433840-32434021,32434235-32434310,
32434413-32434570,32435567-32435738,32435817-32435927,
32436197-32436280
Length = 365
Score = 373 bits (917), Expect = e-103
Identities = 180/306 (58%), Positives = 219/306 (71%), Gaps = 11/306 (3%)
Query: 63 GESERLRLPPWLKTTIPTGSKFNEIKQQLRSLKLSTVCEEARCPNIGECWSGGK------ 116
G ++ P WL+ G K+ +++ + LKL+TVC EA+CPNIGECW+GG
Sbjct: 58 GRDPEVKKPAWLRQRAAQGEKYARLRESIGELKLNTVCVEAQCPNIGECWNGGGGAGGEG 117
Query: 117 HGASTATIMLMGDTCTRGCMFCSVKTSRNPPPLDPEEPRNTAHAINHWGVGYIVLTSVDR 176
G +TATIM++GDTCTRGC FC+VKTS PPP DP EP NTA A+ WGV Y+VLTSVDR
Sbjct: 118 DGIATATIMVLGDTCTRGCRFCAVKTSNKPPPPDPLEPLNTALAVASWGVDYVVLTSVDR 177
Query: 177 DDLPDGGSLHFAETVKEIKKLNKDILVECLVPDFRAVRGCVARVASSGLDVFAHNVETVE 236
DDLPDGGS HFA+T +L ILVECL DFR V+ +A+SGLDVFAHN+ETV
Sbjct: 178 DDLPDGGSSHFAQT-----ELKPGILVECLTSDFRGDLEAVSALANSGLDVFAHNIETVR 232
Query: 237 RLTPFVRDPRAGYRQTLKVLQMAKEINPDLITKSSIMLGLGETDAQVEQTMKDLREAGVD 296
L VRDPRAGY Q+L VL+ AK +ITKSSIMLGLGETD +V+Q M DLR GVD
Sbjct: 233 SLQRIVRDPRAGYDQSLAVLKHAKSCKEGMITKSSIMLGLGETDEEVKQAMIDLRAIGVD 292
Query: 297 CVTLGQYMQPTKKHLKVFEYVTPARFQQWEARGRQLGFLYVASGALVRSSYRAGEFFISA 356
+TLGQY+QPT++HL V EYVTP +FQ W+ G +GF YVASG LVRSSYRAGE F+
Sbjct: 293 ILTLGQYLQPTERHLTVREYVTPEKFQFWKEYGESVGFRYVASGPLVRSSYRAGELFVQN 352
Query: 357 VLRDRK 362
++R+ K
Sbjct: 353 LVRNNK 358
>05_06_0043 +
25143513-25143866,25144010-25144191,25144284-25144374,
25144452-25144568,25144922-25144976,25145008-25145093,
25145190-25145300,25145564-25145608,25145695-25145740,
25146078-25146152,25146902-25146971,25147128-25147437,
25147778-25147851,25147996-25148151,25148416-25148539
Length = 631
Score = 311 bits (764), Expect = 5e-85
Identities = 162/304 (53%), Positives = 194/304 (63%), Gaps = 30/304 (9%)
Query: 63 GESERLRLPPWLKTTIPTGSKFNEIKQQLRSLKLSTVCEEARCPNIGECWSGGK------ 116
G R P WL+ G K+ +++ L LKL+TVC EA+CPNIGECW GG
Sbjct: 71 GRDPAARKPAWLRQRAAQGEKYARLRESLGELKLNTVCVEAQCPNIGECWDGGGGAGGDG 130
Query: 117 HGASTATIMLMGDTCTRGCMFCSVKTSRNPPPLDPEEPRNTAHAINHWGVGYIVLTSVDR 176
G +TATIML+GDTCTRGC FC+VKTS PPP D EP TA A+ WGV Y+VLTSVDR
Sbjct: 131 DGIATATIMLLGDTCTRGCRFCAVKTSNKPPPPDALEPLRTAVAVASWGVDYVVLTSVDR 190
Query: 177 DDLPDGGSLHFAETVKEIKKLNKDILVECLVPDFRAVRGCVARVASSGLDVFAHNVETVE 236
DDLPDGGS HFA+TVK +K+L ILVECL DFR V+ +ASSGLDVFAHN+ET+
Sbjct: 191 DDLPDGGSGHFAQTVKALKELKPGILVECLTSDFRGDLEAVSSLASSGLDVFAHNIETIR 250
Query: 237 RLTPFVRDPRAGYRQTLKVLQMAKEINPDLITKSSIMLGLGETDAQVEQTMKDLREAGVD 296
+T + LQ GETD +V+QTM DLR VD
Sbjct: 251 --------SEFSCSETCEKLQR----------------WYGETDEEVKQTMCDLRAIDVD 286
Query: 297 CVTLGQYMQPTKKHLKVFEYVTPARFQQWEARGRQLGFLYVASGALVRSSYRAGEFFISA 356
+TLGQY+QPT++HL+V EYVTP +F W+ G LGFLYVASG LVRSSYRAGE F+
Sbjct: 287 ILTLGQYLQPTERHLRVREYVTPEKFDFWKEYGESLGFLYVASGPLVRSSYRAGELFVQN 346
Query: 357 VLRD 360
+ D
Sbjct: 347 LFFD 350
>11_06_0251 - 21707953-21708455,21709230-21710284,21711187-21711299
Length = 556
Score = 31.5 bits (68), Expect = 1.1
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 246 RAGYRQT--LKVLQMAKEINPDLITKSSIMLGL-GETDAQVEQTMKDLREAGVDCVTLGQ 302
R GY + L+++Q + I PD+ S + G GET+ + +T+ +R G D +
Sbjct: 359 RRGYTREAYLELVQKIRSIIPDVGLSSDFISGFCGETEEEHAETLTLVRAVGYDMAYMFA 418
Query: 303 YMQPTKKH 310
Y K H
Sbjct: 419 YSMREKTH 426
>06_03_0742 +
24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 31.5 bits (68), Expect = 1.1
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 7 KKYKVTKHLDFPRYKHSNKLDAIREKLKEGPNLTDFISEDRPKNWDEYQGKLKREKGESE 66
+K+ H++F R K +K +A E ++ P D + RPK DE + +E E+E
Sbjct: 939 EKHSKIVHINFTRPKKDDKAEAKAEDIR--PKEGDEAEDTRPKEGDEAEDTRPKEDHEAE 996
>12_02_1035 - 25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 30.7 bits (66), Expect = 1.9
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 181 DGGSLHFA--ETVKEIKKLNKDILVECLVPDF--RAVRGCVARVASSGLDVFAHNVETVE 236
D GSLH A E +EIK +NK + L ++ + + ++ SSG ++ A T+
Sbjct: 939 DFGSLHAAGNELYQEIKLMNKKLGDLQLENNYLEKELSKTMSICDSSGSEIGAGRRRTMR 998
Query: 237 RLTPFVRDPRAGYRQTLKVLQMAKEINPDLITKSSIML 274
R T ++ R +++ ++ KEI+ + KS+ +L
Sbjct: 999 RDTKLLKSGRKSQQESTVNIEQRKEIDHAGLEKSNELL 1036
>01_05_0361 +
21377080-21377281,21378619-21378705,21379862-21380134,
21380304-21380378,21380470-21380550,21380837-21381034,
21381145-21381234,21381310-21381467,21381619-21381741,
21381891-21382034,21382175-21382285,21382583-21382624,
21383043-21383261,21385319-21385627
Length = 703
Score = 30.7 bits (66), Expect = 1.9
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 272 IMLGLGETDAQVEQTMKDLREAGVDCVT-LGQYMQPTKKHLKVFEYVTPARFQQWEARGR 330
+ G GETD +++Q + L +C L +Y Q ++ ++ EY P + E GR
Sbjct: 436 LRFGRGETDEEIKQMLISLTFKAAECANQLQRYEQAYHRYREILEY-DPGNVKAREMTGR 494
>01_01_0466 + 3444444-3445256
Length = 270
Score = 30.7 bits (66), Expect = 1.9
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 229 AHNVETVERLTPFVRDPRAGYRQTLKVLQMAKEINPDLITKSSIMLGLGETDAQVEQTMK 288
A +TV RL + P+A + M K++N + S+ MLG TDA+
Sbjct: 173 ATRFQTVSRLVAGLMHPKAASKSGAITTAMRKQVNGWQVL-SAAMLG---TDARPPARFA 228
Query: 289 DLREAGVDCV 298
LR+ GVD V
Sbjct: 229 PLRDMGVDTV 238
>12_01_1041 -
10711362-10711428,10711571-10712262,10712622-10712777,
10712885-10713957,10714422-10714524,10714694-10714876,
10715007-10715099,10715379-10715564,10716530-10716793
Length = 938
Score = 29.9 bits (64), Expect = 3.4
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 54 YQGKLKREKGESERLRLP--PWLKTTIPTG 81
Y+ ++ EKG ER RLP PW T PTG
Sbjct: 691 YKERILSEKGRRERERLPDRPWKIKTNPTG 720
>11_01_0143 +
1177220-1177462,1177727-1177855,1178114-1178170,
1178369-1178601,1178880-1178971,1179116-1179330,
1180153-1180161
Length = 325
Score = 29.1 bits (62), Expect = 5.9
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 76 TTIPTGSKFNEIKQQ-LRSLKLSTVCEEARCPNIGECWSGG 115
TT P G+ +++ +++ ++ LK++ CE C + W+GG
Sbjct: 264 TTAPQGADYHKCREEVVKLLKVNAPCETKNC-SFNGVWNGG 303
>07_03_1745 - 29176951-29178901,29178960-29179069,29179536-29179547
Length = 690
Score = 29.1 bits (62), Expect = 5.9
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 260 KEINPDLITKSSIMLGLGETDAQVE--QTMKDLREAGVD 296
KE++PD +T ++++ LG++ VE K++R GV+
Sbjct: 599 KEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVE 637
>03_06_0441 - 33961268-33961633
Length = 121
Score = 29.1 bits (62), Expect = 5.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 56 GKLKREKGESERLRLPPWLKTTIPTGSKFNEI 87
G+ +RE E ERLRL W + P G + + +
Sbjct: 70 GERRREAEEGERLRLERWWRVATPLGFESDNV 101
>01_06_0316 - 28419072-28419373,28419405-28420502,28420600-28420819
Length = 539
Score = 29.1 bits (62), Expect = 5.9
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 173 SVDRDDLPDGGSLHFAETVKEIKKLNKDILVECLVPDFRAVRGCVARVASSGLD--VFAH 230
+++ + L DG + T + +LN D+ +CL P + + G A++ S +D VF
Sbjct: 286 AIELERLHDGADFYSTITRDQFDELNLDLFCKCLDPIKKCLTG--AKMDRSSVDDVVFVG 343
Query: 231 NVETVERLTPFVRDPRAGYRQTLKVLQMAKEINPD--LITKSSIMLGLGETDAQVEQTMK 288
+ R+ ++D G ++ K+I+ D ++ M LG D+ V+ +
Sbjct: 344 GSTRIPRVRRLIQDLFDG-------KELRKDISSDEAAACGAATMASLGSDDSLVDLFLF 396
Query: 289 D 289
D
Sbjct: 397 D 397
>02_04_0591 -
24159654-24160155,24160233-24160316,24160898-24160944,
24161035-24161103,24161259-24161310,24161693-24161775,
24162312-24162422,24162808-24163211,24163308-24163380,
24163460-24163510,24163882-24164073,24164176-24164302,
24164753-24164934,24165023-24165226,24165738-24165836
Length = 759
Score = 28.7 bits (61), Expect = 7.8
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 172 TSVDRDDLPDGGSLHFAETVKEIKKLNKDILVECLVPDFRAVRGCVARVASSGL 225
T +DDLP+ GS A KE KD+ E + RA G +VA + +
Sbjct: 659 TEKTKDDLPEDGSNKSASKPKEASSGGKDLKGESKPSEGRAKPGRKPKVAGAAV 712
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.135 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,070,595
Number of Sequences: 37544
Number of extensions: 470726
Number of successful extensions: 1153
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1141
Number of HSP's gapped (non-prelim): 17
length of query: 366
length of database: 14,793,348
effective HSP length: 83
effective length of query: 283
effective length of database: 11,677,196
effective search space: 3304646468
effective search space used: 3304646468
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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