Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001093-TA|BGIBMGA001093-PA|IPR003698|Lipoate synthase,
IPR007197|Radical SAM, IPR006638|Elongator protein 3/MiaB/NifB
(366 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24) 322 2e-88
SB_54890| Best HMM Match : XH (HMM E-Value=3.4) 187 1e-47
SB_58314| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-36) 34 0.21
SB_36628| Best HMM Match : Bac_Ubq_Cox (HMM E-Value=1.1) 31 1.1
SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0) 31 2.0
SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.4
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.4
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 29 4.5
SB_56231| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_18472| Best HMM Match : CcmD (HMM E-Value=3.3) 29 6.0
SB_8325| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.9
SB_54281| Best HMM Match : KAP_NTPase (HMM E-Value=0.46) 29 7.9
>SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)
Length = 676
Score = 322 bits (792), Expect = 2e-88
Identities = 156/264 (59%), Positives = 192/264 (72%), Gaps = 13/264 (4%)
Query: 99 VCEEARCPNIGECWSGGKHGASTATIMLMGDTCTRGCMFCSVKTSRNPPPLDPEEPRNTA 158
VCEEA+CPNIGECW GG+ +TATIM++GD CTRGC FCSVKT++ PPP DP EP NTA
Sbjct: 48 VCEEAKCPNIGECWGGGEDNTATATIMVLGDQCTRGCRFCSVKTNKAPPPPDPNEPINTA 107
Query: 159 HAINHWGVGYIVLTSVDRDDLPDGGSLHFAETVKEIKKLNKDILVECLVPDFRAVRGCVA 218
AI+ W + YIV+TSVDRDDLPDGG+ HFAETV++IKK N +LVECL PDFR R +
Sbjct: 108 EAISRWNLDYIVITSVDRDDLPDGGAGHFAETVRQIKKRNPKMLVECLTPDFRGNREHIR 167
Query: 219 RVASSGLDVFAHNVETVERLTPFVRDPRAGYRQTLKVLQMAKEINPDLITKSSIMLGLGE 278
VA SGLDV+AHNVETV+ L VRDPRA Y+Q+L VL+ KE+ P+++TK+SIMLG+GE
Sbjct: 168 TVAESGLDVYAHNVETVKSLQLLVRDPRANYKQSLDVLRYVKEVRPEMVTKTSIMLGVGE 227
Query: 279 TDAQVEQTMKDLREAGVDC-----VTLGQYMQPTKKHL--------KVFEYVTPARFQQW 325
TD +V QTMK+++ V C + G+ + L KV EYVTP +FQ W
Sbjct: 228 TDDEVLQTMKEVQTFPVMCSSKAVLATGRCCRHLHDALVLFGVFCYKVSEYVTPNKFQHW 287
Query: 326 EARGRQLGFLYVASGALVRSSYRA 349
E G +LGF Y ASG LVRSSY+A
Sbjct: 288 ENVGNELGFAYTASGPLVRSSYKA 311
>SB_54890| Best HMM Match : XH (HMM E-Value=3.4)
Length = 209
Score = 187 bits (456), Expect = 1e-47
Identities = 98/204 (48%), Positives = 140/204 (68%), Gaps = 2/204 (0%)
Query: 146 PPPLDPEEPRNTAHAINHWGVGYIVLTSVDRDDLPDGGSLHFAETVKEIKKLNKDILVEC 205
P +D +EP A +I + + V+TSVDRDDL D GS+ +AETVK I+++N + +E
Sbjct: 3 PETVDWDEPEKVARSIKLMKIKHAVITSVDRDDLKDMGSIIWAETVKAIRRMNPNTTLET 62
Query: 206 LVPDFRAVRGCVARVASSGLDVFAHNVETVERLTPFVRDPRAGYRQTLKVLQMAKEINPD 265
L+PDF+ + R+ +V +HN+ETV+RLT VR +A Y ++L+VL+ K
Sbjct: 63 LIPDFQGNTRNLDRIIEVAPEVVSHNMETVKRLTREVRI-QAKYEKSLEVLRYLKAQGIK 121
Query: 266 LITKSSIMLGLGETDAQVEQTMKDLREAGVDCVTLGQYMQPTKKHLKVFEYVTPARFQQW 325
TKS IMLGLGE + +V Q + DLR+A VD VT+GQY+QP+KKHL V EY++P +F+++
Sbjct: 122 R-TKSGIMLGLGEKEEEVIQVLHDLRDANVDIVTIGQYLQPSKKHLPVKEYISPEQFEKY 180
Query: 326 EARGRQLGFLYVASGALVRSSYRA 349
E G++LGF +V SGALVRSSY A
Sbjct: 181 EKIGKELGFRHVESGALVRSSYHA 204
>SB_58314| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-36)
Length = 444
Score = 33.9 bits (74), Expect = 0.21
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 107 NIGECWSGGKHGASTATIMLMGDTCTRG-CMFCSVKTSRNPPPLDPEEPRNTAHAINHW 164
++G+ S GK + + +M C CSV+T PPP P++P + + HW
Sbjct: 351 SVGKKLSPGKDASPEVIVTMMDKKGEESSCKPCSVQTCIAPPPPKPKKPNDLPYLDVHW 409
>SB_36628| Best HMM Match : Bac_Ubq_Cox (HMM E-Value=1.1)
Length = 461
Score = 31.5 bits (68), Expect = 1.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 60 REKGESERLRLPPWLKTTIPTGSKFNEIKQQLRSLKLST 98
RE + + + L W+KT+ P GS F Q L +KL T
Sbjct: 301 REFHDPDTVELMNWIKTSTPPGSSFTGSMQLLAGVKLCT 339
>SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)
Length = 1705
Score = 30.7 bits (66), Expect = 2.0
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 23 SNKLDAIREKLKEGPNLTDFISEDRPKNWDEYQGKLKREKGESERLRLPPWLKTTIPTGS 82
S + D++ +L + + T ED P ++DE++ +L +E+ + + + L+ T P
Sbjct: 503 SKEDDSLSTELNQADDETKSSEEDMP-SFDEFKRQLLKEEEQKTKQKQQDQLENTAPAKP 561
Query: 83 KFNEIKQQLRSLKLSTVC 100
+ + KQ+ ++ S C
Sbjct: 562 RSRKAKQRKQNNYASIDC 579
>SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1339
Score = 29.9 bits (64), Expect = 3.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 229 AHNVETVERLTPFVRDPRAGYRQTLKVLQMAKEINPDLI 267
A + T R P+ DP GYR L +L A +IN L+
Sbjct: 201 ASSATTSNRPKPYTEDPDPGYRFILGMLSHAMDINRRLV 239
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 29.9 bits (64), Expect = 3.4
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 7/45 (15%)
Query: 25 KLDAIREKLKEGPNLTDFISEDRPKNWDEYQGKLKREKGESERLR 69
KLDA +L++ LT + + K++ E +G L + KGESERLR
Sbjct: 1106 KLDA---ELQQHKTLTAY----KDKSFSELKGNLAKTKGESERLR 1143
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 29.5 bits (63), Expect = 4.5
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 223 SGLDVFAHNVETVERLTPFVRDPRAGYRQTLKVLQMA-KEINPDLITKSSIMLGLGETDA 281
SG D+ H + + + T VRD Q KE+ L TK+ I GE
Sbjct: 114 SGDDMIRH-LHSTHQDTTAVRDKLDDVNTKWSDFQKRLKELTEYLATKTQIAPQAGEEGT 172
Query: 282 QVEQTMKDLREAGVDCVTL-----GQYMQPTKKHLKVFEYV 317
E + +++E + VTL Q +PT + KV EYV
Sbjct: 173 STEPSQPEVQEV-TNAVTLQDQPVTQSFEPTSEEEKVEEYV 212
>SB_56231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 29.1 bits (62), Expect = 6.0
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 145 NPPPLDPEEPRNTAHAINHWGVGYIVLTSVDRDDLPDGGSLHFAETVKEIKKLNKDILVE 204
N +DP++P+N A+ I D DD+ + G+ F ++KK +
Sbjct: 93 NSSSIDPDDPKNGAYVIEEGNDD----DDFDDDDVDNDGTKDFFREKDKLKKFTSKNMYS 148
Query: 205 CLVPDFRAVRGCVARVASS 223
P+ +A + +V SS
Sbjct: 149 EKRPNHKAQKTVEGKVRSS 167
>SB_18472| Best HMM Match : CcmD (HMM E-Value=3.3)
Length = 304
Score = 29.1 bits (62), Expect = 6.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 270 SSIMLGLGETDAQVEQTMKDLREAGVDCVTLGQYMQPTKKHL 311
+S + G+ EQT+ D +AGV ++ G + + T+K L
Sbjct: 239 NSTIAGVTILTLDAEQTLNDTLDAGVHLISFGNFTKQTQKPL 280
>SB_8325| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 29.1 bits (62), Expect = 6.0
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 186 HFAETVKEIKKLNKDILVECLVPDFRAVRGCVARVASSGLDVFAHN 231
H ++ K+IK+ L+ CLV F + V SS L VFAH+
Sbjct: 3 HIRKSSKDIKR--SAFLLPCLVQVFALSNKWIPAVQSSSLAVFAHS 46
>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2509
Score = 28.7 bits (61), Expect = 7.9
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 223 SGLDVFAHNVETVERLTPFVRDPRAGYRQTLKVLQMA-KEINPDLITKSSIMLGLGETDA 281
SG D+ H + + + T VRD Q KE+ L TK+ I GE
Sbjct: 2406 SGDDMIRH-LHSTHQDTTAVRDKLDDVNTKWSDFQKRLKELTEYLATKTQIAPQAGEEGT 2464
Query: 282 QVEQTMKDLREAGVDCVTL-----GQYMQPTKKHLKVFEYV 317
E + +++E + VTL Q +PT + KV EYV
Sbjct: 2465 STEPSQPEVQEV-TNAVTLQDQPVTQSFEPTSEAEKVEEYV 2504
>SB_54281| Best HMM Match : KAP_NTPase (HMM E-Value=0.46)
Length = 911
Score = 28.7 bits (61), Expect = 7.9
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 24 NKLDAIREKLKEGPNLTDFISEDRPKNWDEYQGKLKREKGESERLRLPPWLKTTIPTGSK 83
N L+A+RE + G + F ++ NW L EK RL L+ G K
Sbjct: 585 NLLEALRESPQVGKKVRHFRTQS---NW-----LLAYEKTN----RLGKSLRENQQIGKK 632
Query: 84 FNEIKQQLRSLK--LSTVCEEARCPNIG-ECWSGGKHGASTATIM 125
NE+++Q R+ K L+ E + +G + SGGK A +++M
Sbjct: 633 VNEVRRQTRTEKKRLAMAMREKQLGALGMQTMSGGKIVAKPSSLM 677
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.135 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,585,609
Number of Sequences: 59808
Number of extensions: 533789
Number of successful extensions: 1386
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1376
Number of HSP's gapped (non-prelim): 13
length of query: 366
length of database: 16,821,457
effective HSP length: 83
effective length of query: 283
effective length of database: 11,857,393
effective search space: 3355642219
effective search space used: 3355642219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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