GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001093-TA|BGIBMGA001093-PA|IPR003698|Lipoate synthase,
IPR007197|Radical SAM, IPR006638|Elongator protein 3/MiaB/NifB
         (366 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    27   0.82 
AF533894-1|AAM97679.1|  156|Anopheles gambiae ascorbate transpor...    24   5.8  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 27.1 bits (57), Expect = 0.82
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 254 KVLQMAKEINPDLITKSSIMLGLGETDAQVEQTMKDLREAGVDCVTLGQYMQPTKKHLKV 313
           K+ QMA   +   +     + G    D + E++M  LRE+      + +Y++  +  LK 
Sbjct: 143 KINQMATAPDSHRLKLLREVAGTRVYDERKEESMNLLRESEGKLEKISEYLRTIEDRLKT 202

Query: 314 FEYVTP--ARFQQWEARGRQLGFL 335
            E      + +Q+W+   R L ++
Sbjct: 203 LEEEKEELSEYQKWDKARRTLEYV 226


>AF533894-1|AAM97679.1|  156|Anopheles gambiae ascorbate transporter
           protein.
          Length = 156

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 109 GECWSGGKHGASTATIMLMGDTCTRGCMFCSVKTSRNPPPLDPEEPRNTAHAINHWGVGY 168
           G   +G +   ST +++L       G + C +    N  P  PEE    A     W    
Sbjct: 54  GAIQTGNQTVDSTLSVLLGTTILVGGVLGCVLD---NLIPGTPEERGLVA-----WSKEM 105

Query: 169 IVLTSVDRDDLPDGG 183
            + T+ D DDLP GG
Sbjct: 106 ALETAQDNDDLPAGG 120


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.135    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 387,329
Number of Sequences: 2123
Number of extensions: 15707
Number of successful extensions: 41
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 2
length of query: 366
length of database: 516,269
effective HSP length: 65
effective length of query: 301
effective length of database: 378,274
effective search space: 113860474
effective search space used: 113860474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)