Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001093-TA|BGIBMGA001093-PA|IPR003698|Lipoate synthase,
IPR007197|Radical SAM, IPR006638|Elongator protein 3/MiaB/NifB
(366 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-3|CAA86516.1| 354|Caenorhabditis elegans Hypothetical pr... 431 e-121
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr... 31 0.98
Z73970-1|CAA98244.1| 254|Caenorhabditis elegans Hypothetical pr... 31 0.98
U39470-2|AAC71118.1| 862|Caenorhabditis elegans Temporarily ass... 31 0.98
U58757-4|AAC47922.3| 580|Caenorhabditis elegans Hypothetical pr... 31 1.3
AL161712-3|CAC35908.1| 136|Caenorhabditis elegans Hypothetical ... 31 1.7
Z73973-5|CAA98267.2| 882|Caenorhabditis elegans Hypothetical pr... 30 2.3
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein. 29 4.0
Z70751-1|CAA94751.1| 544|Caenorhabditis elegans Hypothetical pr... 29 6.9
U39999-6|AAA81107.2| 198|Caenorhabditis elegans Hypothetical pr... 29 6.9
Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 9.1
>Z46381-3|CAA86516.1| 354|Caenorhabditis elegans Hypothetical
protein M01F1.3 protein.
Length = 354
Score = 431 bits (1063), Expect = e-121
Identities = 203/334 (60%), Positives = 262/334 (78%), Gaps = 5/334 (1%)
Query: 33 LKEGPNLTDFISEDR-PKNWDEYQGKLKREKGESERLRLPPWLKTT--IPTGSK-FNEIK 88
+K+GP+L DFIS + ++Y+GKLK EKG+ RLRLPPWLK +P+ ++ + +K
Sbjct: 21 VKDGPSLQDFISSASVAEAVEKYEGKLKLEKGD-RRLRLPPWLKKEKILPSENENVSRLK 79
Query: 89 QQLRSLKLSTVCEEARCPNIGECWSGGKHGASTATIMLMGDTCTRGCMFCSVKTSRNPPP 148
+QL+ LKL+TVC+EARCPN+GECW G +TATIMLMGDTCTRGC FCSVKT+R PPP
Sbjct: 80 KQLKHLKLATVCQEARCPNLGECWGGSDDSLATATIMLMGDTCTRGCKFCSVKTARAPPP 139
Query: 149 LDPEEPRNTAHAINHWGVGYIVLTSVDRDDLPDGGSLHFAETVKEIKKLNKDILVECLVP 208
LDP EP NT+ A+ WGV YIVLTSVDRDDLPDGG+ H +TV+ +K ++L+ECL+P
Sbjct: 140 LDPMEPENTSTAVASWGVEYIVLTSVDRDDLPDGGADHLRKTVQLMKLKKPELLIECLLP 199
Query: 209 DFRAVRGCVARVASSGLDVFAHNVETVERLTPFVRDPRAGYRQTLKVLQMAKEINPDLIT 268
DF + V ++A+SGLDV+AHN+ETVERLTP+VRDPRA YRQ+L L+ AKE++P LIT
Sbjct: 200 DFAGDKISVEKMATSGLDVYAHNIETVERLTPWVRDPRAKYRQSLDALRYAKEVSPKLIT 259
Query: 269 KSSIMLGLGETDAQVEQTMKDLREAGVDCVTLGQYMQPTKKHLKVFEYVTPARFQQWEAR 328
K+SIMLGLGE + +++Q + DLR + VD VT GQYMQPTK+HL V E+VTP +F QW
Sbjct: 260 KTSIMLGLGEAEDEIKQCLADLRASNVDVVTFGQYMQPTKRHLLVKEWVTPEKFDQWAEY 319
Query: 329 GRQLGFLYVASGALVRSSYRAGEFFISAVLRDRK 362
++LGFLYVASG LVRSSY+AGEF++ VLR+R+
Sbjct: 320 SKKLGFLYVASGPLVRSSYKAGEFYLKNVLRNRQ 353
>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical
protein F48F5.1 protein.
Length = 1291
Score = 31.5 bits (68), Expect = 0.98
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 27 DAIREKLKEGPNLTDFISEDRPKNWDEYQGKLKREKGESERLRL 70
+A+ K+KE N+ + E + DE Q KL+ ++ +SE ++
Sbjct: 818 NALEAKIKEKSNMRKVVDEQNQREKDELQAKLRADQEKSEARKI 861
>Z73970-1|CAA98244.1| 254|Caenorhabditis elegans Hypothetical
protein C29A12.1 protein.
Length = 254
Score = 31.5 bits (68), Expect = 0.98
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 151 PEEPRNTAHAINHWGVGYIVLTSVDRDDLPDGG-SLHFAETVKEIKKLNKDILVECLVPD 209
PE RN W G LT D+L D +H AETV EI + ++ECLV
Sbjct: 34 PENQRNLVAWAQKWMDGAGTLT----DELEDFSIRVHVAETVSEINPADNAPVMECLVDV 89
Query: 210 FRAV 213
A+
Sbjct: 90 VNAI 93
>U39470-2|AAC71118.1| 862|Caenorhabditis elegans Temporarily
assigned gene nameprotein 127 protein.
Length = 862
Score = 31.5 bits (68), Expect = 0.98
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 22 HSNKLDAIREKLKEGPNLTDFISEDRPKNWDEYQGKLKREK 62
HS+ L I++KLKE N DF++ W E Q L R+K
Sbjct: 237 HSDSLKHIQKKLKESENFRDFVT------WAEAQENLDRQK 271
>U58757-4|AAC47922.3| 580|Caenorhabditis elegans Hypothetical
protein C01B10.4 protein.
Length = 580
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 51 WDEYQGKLKREKGESERLRLPPWLKTTIPTGSKFNEIKQQLRSLKLSTV 99
W+E G+ R + E+ WLK I K E K++L+ + L TV
Sbjct: 473 WNETTGERPRMRKYFEKEVTDYWLKEMIEFDQKVTETKKKLKQISLKTV 521
>AL161712-3|CAC35908.1| 136|Caenorhabditis elegans Hypothetical
protein Y66D12A.6 protein.
Length = 136
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 264 PDLITKSSIMLGLGETDAQVEQTMKDLREAGVDCVTLGQYMQPTKKHLK 312
PDL + SI+ + +A V T +REA C LG K+H K
Sbjct: 41 PDLFEQLSILRNFSD-EANVPSTSSSIREAFDRCEKLGHLQNNKKRHYK 88
>Z73973-5|CAA98267.2| 882|Caenorhabditis elegans Hypothetical
protein F25D1.4 protein.
Length = 882
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 7 KKYKVTKHLDFPRYKHSNKLDAIREKLKEGPNLTDFISED 46
KKYK K + PR +++ ++EKL P++ D I D
Sbjct: 345 KKYKKWKKRNIPRCTLRQEIECVQEKLNIRPHIDDSICPD 384
>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
Length = 2684
Score = 29.5 bits (63), Expect = 4.0
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 37 PNLTDFISEDRPKNWDEYQGKLKREKGESERLRLPPWLKTTIPTGS--KFNEIKQQLRSL 94
P +T D ++++ + ++ R +GE L +KTT P FN + +
Sbjct: 26 PMMTSSHEHDYTNDYEDPE-EMARSRGEGFSNHL--LIKTTPPPQPHPNFNSYEMSMSQQ 82
Query: 95 KLSTVCEEARCPNIGECWSGGKH 117
+ S ++ P + +CW G H
Sbjct: 83 RRSQQHQQPMAPPLSDCWGSGVH 105
>Z70751-1|CAA94751.1| 544|Caenorhabditis elegans Hypothetical
protein F11A3.1 protein.
Length = 544
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 22 HSNKLDAIREKLKEGPNLTDFISEDRPKNWDEYQ 55
H LDAI + + +G N F+S D PK++ ++
Sbjct: 18 HEMLLDAIDKTIADGKNKIAFVSGDNPKHFITFE 51
>U39999-6|AAA81107.2| 198|Caenorhabditis elegans Hypothetical
protein F41G3.10 protein.
Length = 198
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 95 KLSTVCEEARCPNIG--ECWSGGKHGASTATIMLMGDTCTRGCMFCS 139
+ ST C + P G +C + ++A I LM C R C +CS
Sbjct: 95 RTSTTCVDLTNPTTGVSDCTRMASYCNNSAYITLMRQQCPRTCGYCS 141
>Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical
protein ZK675.1 protein.
Length = 1405
Score = 28.3 bits (60), Expect = 9.1
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 26 LDAIREKLKE-GPNLTDFISEDRPKNWDEYQGKLKREKGESERLRLPPWLKTTIPT 80
+D +RE K+ G L + +D ++ ++ G+ KRE G+ ++ P +IPT
Sbjct: 385 IDRVREIAKKYGTELEEEKKKDSGYSFFDFLGRKKREAGDQPKMIHPAQPADSIPT 440
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.135 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,136,792
Number of Sequences: 27539
Number of extensions: 388438
Number of successful extensions: 1166
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1157
Number of HSP's gapped (non-prelim): 12
length of query: 366
length of database: 12,573,161
effective HSP length: 82
effective length of query: 284
effective length of database: 10,314,963
effective search space: 2929449492
effective search space used: 2929449492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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