Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001092-TA|BGIBMGA001092-PA|IPR004153|CXCXC repeat,
IPR000072|Platelet-derived growth factor (PDGF)
         (195 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    27   2.4  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    25   5.6  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   7.4  
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz...    25   9.7  

>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/40 (25%), Positives = 21/40 (52%)

Query: 70  LKPNSPHELVSPSAVWVKNCVGICDYDNEGSCIATETKIR 109
           LKP  PH    P++++  N + + DY ++   +    ++R
Sbjct: 94  LKPKKPHTTPKPASIYTFNELVVLDYPHKDRALRYLERLR 133


>SPBC4B4.01c |||fumble family pantothenate kinase
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 55 MEKSRCGEPKDVFVQLKPNSPHELVSPSAVWVKNCVGICDYDNEG 99
          M ++ CG    +  +   N   +L  P +VW+ N  G    +NEG
Sbjct: 1  MSETECGRFSTISRETISNVERQLSQPPSVWL-NLTGARIIENEG 44


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 29  LGEPFRIGEYIKVVCTSELSNERDHIMEKSRCGEPK-----DVFVQLKPNSPHELVSPSA 83
           +G P +       V T+ +SN+++H    +   +P+     D   +  P+ P+  + PS 
Sbjct: 324 MGSPTKEKSQWGSVSTTGVSNQQNHPAAWNPDNKPQSIVHWDSLRESSPSIPNSPIDPSN 383

Query: 84  VWVKN 88
           ++VKN
Sbjct: 384 LYVKN 388


>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 36  GEYIKVVCTSELSNERDHIMEK 57
           G YIK VC S LS  R  + +K
Sbjct: 294 GSYIKEVCRSALSVPRRELFDK 315


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.137    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 906,019
Number of Sequences: 5004
Number of extensions: 38921
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 4
length of query: 195
length of database: 2,362,478
effective HSP length: 69
effective length of query: 126
effective length of database: 2,017,202
effective search space: 254167452
effective search space used: 254167452
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)