Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001092-TA|BGIBMGA001092-PA|IPR004153|CXCXC repeat,
IPR000072|Platelet-derived growth factor (PDGF)
         (195 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)                   41   8e-04
SB_16418| Best HMM Match : CXCXC (HMM E-Value=0.029)                   38   0.007
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.017
SB_5272| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.022
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       35   0.039
SB_38053| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 

>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
          Length = 996

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 81  PSAVWVKNCVGICDYD--NEGSCIATETKIRHIPVRIYNGNTNKESCATYAVEEHVKCGC 138
           P  + +  C G CD    N   C+A ET+   + V   +G        T     H KCGC
Sbjct: 743 PYFIKLHRCGGSCDITQPNVRECVALETERVKVGVIAISGVPRD----TIMAVNHTKCGC 798

Query: 139 -CALSPDHC-VSPRVFNPRKCSCHC 161
            C   P  C    +V+ P  C C C
Sbjct: 799 QCVAKPSDCDPEVQVWEPNNCLCKC 823


>SB_16418| Best HMM Match : CXCXC (HMM E-Value=0.029)
          Length = 171

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 10/132 (7%)

Query: 35  IGEYIKVVCTSELSNERD--HIMEKSRCGE-PKDVFVQLKPNSPHELVSPSAVWVKNCVG 91
           +  Y   V   ++ N+ D   ++ + +CG  P+   V     S      P+ V +  C G
Sbjct: 22  VNTYSDYVTDDDILNDEDVYRMLPEVKCGAYPRVERVYPATASTSLPRHPTFVMLHRCAG 81

Query: 92  ICDYDNEGSCIATETKIRHIPVRIYNGNTNKESCATYAVEEHVKCGC-CAL-SPDHCVSP 149
            CD      C   ++   +IPV   +  TN+ +  +  V  H KC C C +  P  C + 
Sbjct: 82  SCD-QTYYDCQPVQSSSFYIPVD--DVITNQVTMVS--VTNHTKCACSCKIPQPLTCGTD 136

Query: 150 RVFNPRKCSCHC 161
           + +N   C C C
Sbjct: 137 KQWNSAHCRCEC 148


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 63   PKDVFVQLKPNSPHELVSPSAVWVKNCVGICDYDNEGSCIATETKIRHIPVRIYNGNTNK 122
            P D F   KPN P +    +A  +K  VG  ++  +  C  ++  ++ +P      NT  
Sbjct: 1494 PSDCFESCKPNCPIKCCPATA--IKCPVGCSEHSCKPEC-PSKCCMKVLPPTTLGQNTAN 1550

Query: 123  ESCATYAV---EEHVKCGCCALSPDHCVSPRVFNPRKCSCHCPNI 164
              C  Y +   +      CC      C  P   +P+ C   CP+I
Sbjct: 1551 SLCPVYCLTSCKPDCPIKCCTKLSSSC--PADCSPQNCKSSCPSI 1593


>SB_5272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 35.9 bits (79), Expect = 0.022
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 77  ELVSPSAVWVKNCVGICDYDNEGSCIATETKIRHIPVRIYNGNTNKESCATYAVEEHVKC 136
           + V P  V +  C G       GS I T  +   I +++   NT   +  T  +  H  C
Sbjct: 134 QYVFPMNVQLHRCAGTPQCSIGGSHICTLKRRETILLKVTEANTGSFNYVT--MHNHTAC 191

Query: 137 GC-CALSPDHCVSPRVFNPRKCSCHC 161
            C C   P  C   + F+   C+C C
Sbjct: 192 HCACTKQPSDCNQFQRFDEIACACVC 217



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 125 CATYAVEEHVKCGCCALSPDHCVSPRVFNPRKCSCHC--PNIEDR 167
           C  +   + + C C       C + + +NP+ C C C  P ++D+
Sbjct: 202 CNQFQRFDEIACACVCKRKWKCSAGKTWNPKLCYCECETPCLKDQ 246


>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 35.1 bits (77), Expect = 0.039
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 77  ELVSPSAVWVKNCVGICDYDNEGSCIATETKIRHIPVRIYNGNTNKESCAT--YAVEEHV 134
           +L  P   W  +C G+C     GSC +   K   +P   Y+G T  + C T  Y  E   
Sbjct: 167 QLPCPDGQWGIDCKGVCTCSEYGSCDSRTGKCHCMPG--YSGPTCIDECPTGYYGYECTQ 224

Query: 135 KCGC 138
           KC C
Sbjct: 225 KCQC 228


>SB_38053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 113 VRIYNGNTNKESCATYAVEEHVKCGCCALSPDHCVSPRVFNPRKCS 158
           V I +GNT  ++ +TY +   VKC C  +S   CV      P +C+
Sbjct: 30  VNIVSGNTQTKTASTYVI---VKCKCSMMSNLGCVHEPPVQPDRCA 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.137    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,040,111
Number of Sequences: 59808
Number of extensions: 316507
Number of successful extensions: 616
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 609
Number of HSP's gapped (non-prelim): 10
length of query: 195
length of database: 16,821,457
effective HSP length: 78
effective length of query: 117
effective length of database: 12,156,433
effective search space: 1422302661
effective search space used: 1422302661
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)