Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001092-TA|BGIBMGA001092-PA|IPR004153|CXCXC repeat,
IPR000072|Platelet-derived growth factor (PDGF)
         (195 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   2.6  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   2.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   3.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   3.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   3.4  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 146 CVSPRVFN--PRKCSCHCPNIEDRRECVK 172
           C S  +F+    +C   CPN+  +  C+K
Sbjct: 37  CPSNEIFSRCDGRCQRFCPNVVPKPLCIK 65


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 146 CVSPRVFN--PRKCSCHCPNIEDRRECVK 172
           C S  +F+    +C   CPN+  +  C+K
Sbjct: 37  CPSNEIFSRCDGRCQRFCPNVVPKPLCIK 65


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 161 CPNIEDRRECVKKV-RKMMDVLLI 183
           C +  DR EC++KV +K  DV+ +
Sbjct: 62  CISGRDRYECIEKVGKKEADVVAV 85


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 161 CPNIEDRRECVKKV-RKMMDVLLI 183
           C +  DR EC++KV +K  DV+ +
Sbjct: 62  CISGRDRYECIEKVGKKEADVVAV 85


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 161 CPNIEDRRECVKKV-RKMMDVLLI 183
           C +  DR EC++KV +K  DV+ +
Sbjct: 62  CISGRDRYECIEKVGKKEADVVAV 85


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,014
Number of Sequences: 429
Number of extensions: 2610
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 195
length of database: 140,377
effective HSP length: 54
effective length of query: 141
effective length of database: 117,211
effective search space: 16526751
effective search space used: 16526751
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)