Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001092-TA|BGIBMGA001092-PA|IPR004153|CXCXC repeat,
IPR000072|Platelet-derived growth factor (PDGF)
(195 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024763-7|AAF60517.1| 304|Caenorhabditis elegans Pdgf/vegf gro... 52 4e-07
AF100669-11|AAK39270.2| 737|Caenorhabditis elegans Dipeptidyl p... 30 0.94
Z70687-1|CAA94616.3| 403|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical pr... 29 1.6
U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein. 29 1.6
Z82278-7|CAJ43451.1| 416|Caenorhabditis elegans Hypothetical pr... 29 2.2
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 29 2.9
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 29 2.9
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 28 3.8
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 28 5.0
AF016451-4|AAB65996.1| 388|Caenorhabditis elegans Activated in ... 28 5.0
AF016451-3|AAB66001.1| 388|Caenorhabditis elegans Prion-like-(q... 28 5.0
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 27 8.8
AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kina... 27 8.8
AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascul... 27 8.8
>AC024763-7|AAF60517.1| 304|Caenorhabditis elegans Pdgf/vegf growth
factor relatedprotein 1 protein.
Length = 304
Score = 51.6 bits (118), Expect = 4e-07
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 73 NSPHELVSPSAVWVKNCVGICDYDNEGSCIATETKIR-HIPVRIYNGNTNKESCATYAV- 130
+ P L+ P VK CVG C E T ++ H+ +Y GN T +
Sbjct: 128 DDPQVLMYPKCYEVKQCVGSCCNSVETCHPGTINLVKKHVAELLYIGNGRFMFNMTKEIT 187
Query: 131 -EEHVKCGC--CALSPDHCVSPRVFNPRKCSCHCPNIEDRRECV 171
EEH C C C + C +P R C+C C N E+R CV
Sbjct: 188 MEEHTSCSCFDCGSNTPQC-APGFVVGRSCTCECANKEERNNCV 230
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 106 TKIRHIPVRIYNGNTNKESCAT-YAVEEHVKCGCCALSP-DHCVSPRVFNPRKCSCHC 161
T H ++ +N CA + V C C ++CV +N C C C
Sbjct: 187 TMEEHTSCSCFDCGSNTPQCAPGFVVGRSCTCECANKEERNNCVGNATWNAETCKCEC 244
>AF100669-11|AAK39270.2| 737|Caenorhabditis elegans Dipeptidyl
peptidase four (iv)family protein 5 protein.
Length = 737
Score = 30.3 bits (65), Expect = 0.94
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 90 VGICDYDNEGSCI-ATETKIRHIPVRIYNGNTNKESCATYAVEEHVKCGCCALS 142
V +C+Y+N+ S A+ +++ + + I G+ K+ Y +EEHV+ C LS
Sbjct: 90 VPMCNYENQRSVYSASNSRVAQL-LTIGTGDDKKQYLKIYNLEEHVEELCADLS 142
>Z70687-1|CAA94616.3| 403|Caenorhabditis elegans Hypothetical
protein T14C1.1 protein.
Length = 403
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 60 CGEPKDVFVQLKPNSPHELVSPSAVWVKNCVGICDYDNEGS 100
C + V+ +K H+++ PS+V +NC +C GS
Sbjct: 21 CDVNRVVYASIKQLISHDIIDPSSVGFQNCEPLCGICYHGS 61
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical protein
R08B4.1b protein.
Length = 1160
Score = 29.5 bits (63), Expect = 1.6
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 31 EPFRIGEYIKVVCT--SELSNERDHIMEKSRCGEPKDVFVQLKPNSPHELVSPSAVWVKN 88
EP ++ E++ ++ L H M +++CG+ ++++ P+ E + S + V +
Sbjct: 1000 EPEKVQEFLTIMTEYGKTLRITSRHFMYRNKCGKSYPQYIKMLPHD-GEAIFASDLEVGD 1058
Query: 89 CVGICDYDNEGSCIATETKIRHIPVRIYNGNTN 121
CV + Y + ET R + IY+ TN
Sbjct: 1059 CVVVL-YKGKYRQQKIETITRSVRTGIYSPLTN 1090
>Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical protein
R08B4.1a protein.
Length = 1137
Score = 29.5 bits (63), Expect = 1.6
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 31 EPFRIGEYIKVVCT--SELSNERDHIMEKSRCGEPKDVFVQLKPNSPHELVSPSAVWVKN 88
EP ++ E++ ++ L H M +++CG+ ++++ P+ E + S + V +
Sbjct: 977 EPEKVQEFLTIMTEYGKTLRITSRHFMYRNKCGKSYPQYIKMLPHD-GEAIFASDLEVGD 1035
Query: 89 CVGICDYDNEGSCIATETKIRHIPVRIYNGNTN 121
CV + Y + ET R + IY+ TN
Sbjct: 1036 CVVVL-YKGKYRQQKIETITRSVRTGIYSPLTN 1067
>U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein.
Length = 790
Score = 29.5 bits (63), Expect = 1.6
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 31 EPFRIGEYIKVVCT--SELSNERDHIMEKSRCGEPKDVFVQLKPNSPHELVSPSAVWVKN 88
EP ++ E++ ++ L H M +++CG+ ++++ P+ E + S + V +
Sbjct: 630 EPEKVQEFLTIMTEYGKTLRITSRHFMYRNKCGKSYPQYIKMLPHD-GEAIFASDLEVGD 688
Query: 89 CVGICDYDNEGSCIATETKIRHIPVRIYNGNTN 121
CV + Y + ET R + IY+ TN
Sbjct: 689 CVVVL-YKGKYRQQKIETITRSVRTGIYSPLTN 720
>Z82278-7|CAJ43451.1| 416|Caenorhabditis elegans Hypothetical
protein M162.11 protein.
Length = 416
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/60 (23%), Positives = 30/60 (50%)
Query: 39 IKVVCTSELSNERDHIMEKSRCGEPKDVFVQLKPNSPHELVSPSAVWVKNCVGICDYDNE 98
I+ SE+ + DH+M R K+ F + + ++++ S ++ + + + DYD E
Sbjct: 318 IETNTVSEIHLQIDHVMHSKRFEIAKETFSEKEAIQIRDILTKSTLFEEGLIKLPDYDYE 377
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.7 bits (61), Expect = 2.9
Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 77 ELVSPSAVWVKNCVGICDYDNEGSCIATETKIRHIPVRIYNGNTNKESCAT--YAVEEHV 134
E + P + +NC C+ N SC + +P ++G ++SC + Y +
Sbjct: 1155 EFLCPFGQFGRNCAQRCNCKNGASCDRKTGRCECLPG--WSGEHCEKSCVSGHYGAKCEE 1212
Query: 135 KCGC-----CALSPDHCVSPRVFNPRKCSCHCPNIEDRRECVKKVR 175
C C C HC + +KC+ C R C + R
Sbjct: 1213 TCECENGALCDPISGHCSCQPGWRGKKCNRPCLKGYFGRHCSQSCR 1258
Score = 28.3 bits (60), Expect = 3.8
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 77 ELVSPSAVWVKNCVGICDYDNEGSCIATETKIRHIPVRIYNGNTNKESC--ATYAVEEHV 134
E+ S + C IC+ +N G+C + R +P + G T + C +
Sbjct: 1370 EIACQSDRFGPTCEKICNCENGGTCDRLTGQCRCLPG--FTGMTCNQVCPEGRFGAGCKE 1427
Query: 135 KCGC----CALSPDHCVSPRVFNPRKCSCHCPN 163
KC C C S C F C CP+
Sbjct: 1428 KCRCANGHCNASSGECKCNLGFTGPSCEQSCPS 1460
Score = 27.9 bits (59), Expect = 5.0
Identities = 35/144 (24%), Positives = 50/144 (34%), Gaps = 16/144 (11%)
Query: 36 GEYIKVVCTSELSNERDHIMEKSRCGEPKDVFVQLKPNSPHELVSPSAVWVKNCVGICDY 95
G + C S DHI + +C PK +S EL P + ++C CD
Sbjct: 1250 GRHCSQSCRCANSKSCDHISGRCQC--PKGY----AGHSCTELC-PDGTFGESCSQKCDC 1302
Query: 96 DNEGSCIATETKIRHIPVRIYNGNTNKESCAT--YAVEEHVKCGC-----CALSPDHCVS 148
C A K P ++G+ K C + + + C C C S CV
Sbjct: 1303 GENSMCDAISGKCFCKPG--HSGSDCKSGCVQGRFGPDCNQLCSCENGGVCDSSTGSCVC 1360
Query: 149 PRVFNPRKCSCHCPNIEDRRECVK 172
P + KC C + C K
Sbjct: 1361 PPGYIGTKCEIACQSDRFGPTCEK 1384
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.7 bits (61), Expect = 2.9
Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 77 ELVSPSAVWVKNCVGICDYDNEGSCIATETKIRHIPVRIYNGNTNKESCAT--YAVEEHV 134
E + P + +NC C+ N SC + +P ++G ++SC + Y +
Sbjct: 1155 EFLCPFGQFGRNCAQRCNCKNGASCDRKTGRCECLPG--WSGEHCEKSCVSGHYGAKCEE 1212
Query: 135 KCGC-----CALSPDHCVSPRVFNPRKCSCHCPNIEDRRECVKKVR 175
C C C HC + +KC+ C R C + R
Sbjct: 1213 TCECENGALCDPISGHCSCQPGWRGKKCNRPCLKGYFGRHCSQSCR 1258
Score = 28.3 bits (60), Expect = 3.8
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 77 ELVSPSAVWVKNCVGICDYDNEGSCIATETKIRHIPVRIYNGNTNKESC--ATYAVEEHV 134
E+ S + C IC+ +N G+C + R +P + G T + C +
Sbjct: 1370 EIACQSDRFGPTCEKICNCENGGTCDRLTGQCRCLPG--FTGMTCNQVCPEGRFGAGCKE 1427
Query: 135 KCGC----CALSPDHCVSPRVFNPRKCSCHCPN 163
KC C C S C F C CP+
Sbjct: 1428 KCRCANGHCNASSGECKCNLGFTGPSCEQSCPS 1460
Score = 27.9 bits (59), Expect = 5.0
Identities = 35/144 (24%), Positives = 50/144 (34%), Gaps = 16/144 (11%)
Query: 36 GEYIKVVCTSELSNERDHIMEKSRCGEPKDVFVQLKPNSPHELVSPSAVWVKNCVGICDY 95
G + C S DHI + +C PK +S EL P + ++C CD
Sbjct: 1250 GRHCSQSCRCANSKSCDHISGRCQC--PKGY----AGHSCTELC-PDGTFGESCSQKCDC 1302
Query: 96 DNEGSCIATETKIRHIPVRIYNGNTNKESCAT--YAVEEHVKCGC-----CALSPDHCVS 148
C A K P ++G+ K C + + + C C C S CV
Sbjct: 1303 GENSMCDAISGKCFCKPG--HSGSDCKSGCVQGRFGPDCNQLCSCENGGVCDSSTGSCVC 1360
Query: 149 PRVFNPRKCSCHCPNIEDRRECVK 172
P + KC C + C K
Sbjct: 1361 PPGYIGTKCEIACQSDRFGPTCEK 1384
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 126 ATYAVEEHVKCGCCALSPDHCVSPRVFNPRKCSCHCPN---IEDRRECVKKVRKM 177
AT ++ CGC + C + P++ SC C N ++ C + V+++
Sbjct: 19 ATSIRDKRQSCGCASQVQPSCSCQQATQPQQYSCSCQNTAPVQTSCSCAQPVQQV 73
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 27.9 bits (59), Expect = 5.0
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 3/130 (2%)
Query: 57 KSRCGEPKDVFVQLKPNSPHELVSPSAVWVKNCVGICDYDNEGSCIATETKIRHIPVRIY 116
K+ PK+ P + + + W K + D+ +A + + I +
Sbjct: 114 KTPTPRPKECPTSFLPKKEKKTKTRTVQWSKINASVVQDDSVWGKLAKASNV-DIDFDLL 172
Query: 117 NGNTNKESCATYAVEEHVKCGCC-ALSPDHC-VSPRVFNPRKCSCHCPNIEDRRECVKKV 174
+ ES A E VK G AL ++ +S ++FNP+K I + K
Sbjct: 173 DNFFGIESLAVSGAAEVVKVGILRALGKNYKKISKKIFNPKKHFFFLLKISNSLNFQKST 232
Query: 175 RKMMDVLLIT 184
RK V L+T
Sbjct: 233 RKDAHVELLT 242
>AF016451-4|AAB65996.1| 388|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 6 protein.
Length = 388
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 129 AVEEHVKCGCCALSPDHCVSPRVFNPRKCSCHCPNIEDR 167
A+ E +CGC C +V + CSC ++ +
Sbjct: 21 AIREKRQCGCAQPQQSQCSCQQVQQTQSCSCQSAPVQQQ 59
>AF016451-3|AAB66001.1| 388|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 5
protein.
Length = 388
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 129 AVEEHVKCGCCALSPDHCVSPRVFNPRKCSCHCPNIEDR 167
A+ E +CGC C +V + CSC ++ +
Sbjct: 21 AIREKRQCGCAQPQQSQCSCQQVQQTQSCSCQSAPVQQQ 59
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 131 EEHVKCGCCALSPDHCVSPRVFNPRKCSCHCPN---IEDRRECVKKVRKM 177
++ CGC + C + P++ SC C N ++ C + V+++
Sbjct: 25 DKRQSCGCASQVQPSCSCQQATQPQQYSCSCQNTAPVQTSCSCAQPVQQV 74
>AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kinase
receptor T17A3.1 protein.
Length = 1083
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 118 GNTNKESCATYAVEEHVKCGCCALSPDHCVS 148
G T +C T + +H+K G L P++C S
Sbjct: 1015 GGTPYPTCVTENILKHIKNGSRNLQPEYCPS 1045
>AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascular
endothelial growthfactor) receptor family protein 1
protein.
Length = 1083
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 118 GNTNKESCATYAVEEHVKCGCCALSPDHCVS 148
G T +C T + +H+K G L P++C S
Sbjct: 1015 GGTPYPTCVTENILKHIKNGSRNLQPEYCPS 1045
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.322 0.137 0.442
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,129,127
Number of Sequences: 27539
Number of extensions: 233577
Number of successful extensions: 499
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 27
length of query: 195
length of database: 12,573,161
effective HSP length: 78
effective length of query: 117
effective length of database: 10,425,119
effective search space: 1219738923
effective search space used: 1219738923
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
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