GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001092-TA|BGIBMGA001092-PA|IPR004153|CXCXC repeat,
IPR000072|Platelet-derived growth factor (PDGF)
         (195 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA ...    30   1.2  
At4g14980.1 68417.m02302 DC1 domain-containing protein contains ...    28   4.8  
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    27   6.3  
At4g26610.1 68417.m03835 protein kinase, putative similar to pro...    27   6.3  
At1g05840.1 68414.m00611 aspartyl protease family protein contai...    27   6.3  
At2g22410.1 68415.m02657 pentatricopeptide (PPR) repeat-containi...    27   8.4  

>At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA
           ligase identical to SP|O23627 Glycyl-tRNA synthetase (EC
           6.1.1.14) (Glycine--tRNA ligase) (GlyRS) {Arabidopsis
           thaliana}
          Length = 729

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 27  ERLGEPFRIGEYIKVVCTSELSNERDHIMEKSRCGEPKDVFVQLKPNSPHEL 78
           E+ G  +R    +K  CT +L  E+D  +   +  E KDV   ++  SP +L
Sbjct: 202 EKTGTCYRADHLLKDYCTEKL--EKDLTISAEKAAELKDVLAVMEDFSPEQL 251


>At4g14980.1 68417.m02302 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 470

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 6/43 (13%)

Query: 131 EEHVKCGCCALSPDHCVSPRVFNPRKCSCHCPNIEDRRECVKK 173
           EEH +CG C  + D      V+   KCS  CPN      C  K
Sbjct: 120 EEHWECGVCRKTVDW-----VYGAFKCS-RCPNYAVHSRCATK 156


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 7/49 (14%)

Query: 136 CG-CCAL--SPDHCVS-PRVFNPRKCSCHCPNIEDRRECVKKVRKMMDV 180
           CG CC L   P  C S P++    K  C C  +ED R C  K     DV
Sbjct: 198 CGHCCLLLCHPGPCASCPKLV---KAKCFCGGVEDVRRCGHKQFSCGDV 243


>At4g26610.1 68417.m03835 protein kinase, putative similar to
           protein kinase G11A [Oryza sativa] SWISS-PROT:P47997
          Length = 506

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 90  VGICDYDNEGSCIATETKIRHIPVRIYNGNTNKESCATYAVEEHVKCGCCALSPDHCVSP 149
           V + D+D    C  + T +R   V    G  N   CA  A    ++   C  +P  C SP
Sbjct: 262 VMLSDFDLSLRCTVSPTVVRST-VLASEGQKNSGYCAQPAC---IQQPSCISAPTTCFSP 317

Query: 150 RVFNPR 155
           R F+ +
Sbjct: 318 RYFSSK 323


>At1g05840.1 68414.m00611 aspartyl protease family protein contains
           Pfam PF00026: Eukaryotic aspartyl protease
          Length = 485

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 59  RCGEPKDVFVQLKPNSPHELVSPSAVWV-KNCVGI-CDY----DNEGSCIATETKIRHIP 112
           R  +PK     L PN PH  V+ +AV V +  + I  D     D +G+ I + T + ++P
Sbjct: 265 RVVQPKVNMTPLVPNQPHYNVNMTAVQVGQEFLTIPADLFQPGDRKGAIIDSGTTLAYLP 324

Query: 113 VRIYNGNTNKESCATYAVEEHV 134
             IY     K +    A++ H+
Sbjct: 325 EIIYEPLVKKITSQEPALKVHI 346


>At2g22410.1 68415.m02657 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 681

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 110 HIPVRIYNGNTN-KESCATYAVEEHVKCGCCALSPDHCVSPRVF 152
           ++ +R ++ + N KES   Y  ++ ++ GCC   PDH   P +F
Sbjct: 122 NVTIRGFSESENPKESFLLY--KQMLRHGCCESRPDHFTYPVLF 163


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.137    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,793,752
Number of Sequences: 28952
Number of extensions: 209984
Number of successful extensions: 374
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 6
length of query: 195
length of database: 12,070,560
effective HSP length: 77
effective length of query: 118
effective length of database: 9,841,256
effective search space: 1161268208
effective search space used: 1161268208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)