Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001091-TA|BGIBMGA001091-PA|IPR002861|Reeler region,
IPR009465|Spondin, N-terminal, IPR000884|Thrombospondin, type I,
IPR002223|Proteinase inhibitor I2, Kunitz metazoa,
IPR000437|Prokaryotic membrane lipoprotein lipid attachment site
         (744 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   3.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   3.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   9.0  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 170 PDCCACDDAKYRTHPKNFPTQALWLTH 196
           PDC   +  K   H  + P   LWL H
Sbjct: 90  PDCFFKNAKKVTFHEMSIPNHYLWLYH 116


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 113  VEADDLPKTEVQVMWKAPP 131
            +  DDL +  ++V WK PP
Sbjct: 983  IRVDDLDQHTLKVTWKPPP 1001


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
          kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 12/26 (46%), Positives = 13/26 (50%)

Query: 9  WLGLVSAALACELNPGPGVGSKSPGD 34
          +L   S  LA E    PG GSK P D
Sbjct: 42 FLQCASLKLAFEPRRNPGPGSKGPRD 67


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,229
Number of Sequences: 429
Number of extensions: 9013
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 3
length of query: 744
length of database: 140,377
effective HSP length: 63
effective length of query: 681
effective length of database: 113,350
effective search space: 77191350
effective search space used: 77191350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)