Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001091-TA|BGIBMGA001091-PA|IPR002861|Reeler region,
IPR009465|Spondin, N-terminal, IPR000884|Thrombospondin, type I,
IPR002223|Proteinase inhibitor I2, Kunitz metazoa,
IPR000437|Prokaryotic membrane lipoprotein lipid attachment site
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identi...    31   2.8  
At5g15500.2 68418.m01815 ankyrin repeat family protein contains ...    30   4.9  
At5g15500.1 68418.m01814 ankyrin repeat family protein contains ...    30   4.9  
At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12) ...    29   8.5  
At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12) ...    29   8.5  

>At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identical
           to PRLI-interacting factor K [Arabidopsis thaliana]
           GI:11139266; contains Pfam profiles PF03152: Ubiquitin
           fusion degradation protein UFD1, PF00096: Zinc finger,
           C2H2 type
          Length = 561

 Score = 31.1 bits (67), Expect = 2.8
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 494 VTCGVGISTRRRQFVNHMGLKKCPLVQIEENRKCMXXXXXXXXXXXXXD-----PRCPTS 548
           +TCG GI   + Q V H G K CPL ++   R C              D         ++
Sbjct: 472 LTCGCGIVLEKEQMVQHQG-KDCPL-RLIACRFCGDMVEAGNSAADTRDRMRGMSEHEST 529

Query: 549 AWSGWSPCSASCGRGVRFR 567
             S  +PC  SCGR V  +
Sbjct: 530 CGSRTAPCD-SCGRSVMLK 547


>At5g15500.2 68418.m01815 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 457

 Score = 30.3 bits (65), Expect = 4.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 295 LDLCQKDCSWVESKIIDLYPYDAGT 319
           L LCQKD  W+E+++I+    D  T
Sbjct: 168 LRLCQKDAEWIETRVINRRDKDGNT 192


>At5g15500.1 68418.m01814 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 351

 Score = 30.3 bits (65), Expect = 4.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 295 LDLCQKDCSWVESKIIDLYPYDAGT 319
           L LCQKD  W+E+++I+    D  T
Sbjct: 62  LRLCQKDAEWIETRVINRRDKDGNT 86


>At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12)
           almost identical to ubiquitin-specific protease 12
           GI:11993471 [Arabidopsis thaliana], one amino acid
           difference
          Length = 1115

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 4/103 (3%)

Query: 275 YLSLASMFGPSPDWVVGVSGLDLCQKDCSWVESKIIDLYPYDAGTDNGVSYMSPNSETVP 334
           ++ L+ ++ PS  ++V     D    +      K++D + YD+  + G   +     T  
Sbjct: 153 FMPLSELYDPSRGYLVN----DTVLVEAEVAVRKVLDYWSYDSKKETGFVGLKNQGATCY 208

Query: 335 RERMYRITPMFPEDPRAPFYDPDSKTMAPMARLYLTREKLISK 377
              + +     P   +A ++ P ++  AP A + L  + L  K
Sbjct: 209 MNSLLQTLYHIPYFRKAVYHMPTTENDAPTASIPLALQSLFYK 251


>At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12)
           almost identical to ubiquitin-specific protease 12
           GI:11993471 [Arabidopsis thaliana], one amino acid
           difference
          Length = 1116

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 4/103 (3%)

Query: 275 YLSLASMFGPSPDWVVGVSGLDLCQKDCSWVESKIIDLYPYDAGTDNGVSYMSPNSETVP 334
           ++ L+ ++ PS  ++V     D    +      K++D + YD+  + G   +     T  
Sbjct: 154 FMPLSELYDPSRGYLVN----DTVLVEAEVAVRKVLDYWSYDSKKETGFVGLKNQGATCY 209

Query: 335 RERMYRITPMFPEDPRAPFYDPDSKTMAPMARLYLTREKLISK 377
              + +     P   +A ++ P ++  AP A + L  + L  K
Sbjct: 210 MNSLLQTLYHIPYFRKAVYHMPTTENDAPTASIPLALQSLFYK 252


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.135    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,885,195
Number of Sequences: 28952
Number of extensions: 722748
Number of successful extensions: 1211
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1209
Number of HSP's gapped (non-prelim): 5
length of query: 744
length of database: 12,070,560
effective HSP length: 86
effective length of query: 658
effective length of database: 9,580,688
effective search space: 6304092704
effective search space used: 6304092704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)