GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001091-TA|BGIBMGA001091-PA|IPR002861|Reeler region,
IPR009465|Spondin, N-terminal, IPR000884|Thrombospondin, type I,
IPR002223|Proteinase inhibitor I2, Kunitz metazoa,
IPR000437|Prokaryotic membrane lipoprotein lipid attachment site
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    29   3.1  
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    29   3.1  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    29   3.1  
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M...    28   4.1  

>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 35  NHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFAGFKIILDPLN 81
           NHY  I++     Y       +TLV + T++V+ +      IL PLN
Sbjct: 524 NHYEKILSRSHSNYLAQISINMTLVSNETNEVLSRLTILGTILIPLN 570


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 65  DVVQQFAGFKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQ 124
           DV+  F  F  I   +N D  RA   +G   ++ +T    D E     +++ +L  +E+Q
Sbjct: 100 DVLSLFENFHPIRVIMNYD--RAGRSEGSCDVYFETSQ--DAEDAQKTLQSTNLKGSEIQ 155

Query: 125 VMWKAPPA 132
           +  K+PP+
Sbjct: 156 ISKKSPPS 163


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 313 YPYDAGTDNGVSYMSPNSETVPR 335
           YPYDA    G  Y+S  SE +PR
Sbjct: 602 YPYDAPVFKGSGYLSQLSEALPR 624


>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/51 (25%), Positives = 24/51 (47%)

Query: 227 EWGSVGLMERELRQHGGLLRSIVKAQGLWHPRVNSNTSAAFTVDKKRHYLS 277
           E+  + LM + +      +  + K + LW  ++NS T      DK + +LS
Sbjct: 55  EFQQIRLMHKRMLLRDEKIDELAKLEHLWQKQINSITQMRTKFDKTKSWLS 105


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.135    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,288,228
Number of Sequences: 5004
Number of extensions: 128932
Number of successful extensions: 239
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 4
length of query: 744
length of database: 2,362,478
effective HSP length: 78
effective length of query: 666
effective length of database: 1,972,166
effective search space: 1313462556
effective search space used: 1313462556
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)