Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001090-TA|BGIBMGA001090-PA|undefined
         (136 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   1.7  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   2.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   5.2  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 78  PSANINNFTRSGWRTKDNRDKSRS 101
           P  NI N ++SG   KD  D + S
Sbjct: 360 PLNNIQNLSQSGINYKDTNDNNVS 383


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 16/80 (20%), Positives = 29/80 (36%)

Query: 18  RMKGPGGKGHAEMAVSRPRGAGVDTPTSEPGLAATDMWDSDWDEDPEELFVYRHQRRLSD 77
           R K P G  + + +    +   ++   +E      D    +W  D  E  V    + L++
Sbjct: 79  RSKRPNGDTNGDTSQVDDQNESLEASVNENSKNGDDDEGHEWQADVSEEAVRARMQDLTE 138

Query: 78  PSANINNFTRSGWRTKDNRD 97
            + N+        R KD  D
Sbjct: 139 GAKNMTINDDLEKREKDRMD 158


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 12/49 (24%), Positives = 19/49 (38%)

Query: 56  DSDWDEDPEELFVYRHQRRLSDPSANINNFTRSGWRTKDNRDKSRSENE 104
           DSD DE+    F  R  +  S P   +    +   +  +N  K    +E
Sbjct: 40  DSDNDEEERPSFKSRKPKNYSAPIGFVAGGVQQAGKKPENVKKEDESDE 88


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.132    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,497
Number of Sequences: 317
Number of extensions: 1245
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 136
length of database: 114,650
effective HSP length: 51
effective length of query: 85
effective length of database: 98,483
effective search space:  8371055
effective search space used:  8371055
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.6 bits)
S2: 39 (19.8 bits)