Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001090-TA|BGIBMGA001090-PA|undefined
         (136 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    31   0.063
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    27   1.4  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    26   1.8  
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces...    25   3.1  
SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces pom...    25   4.1  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    25   4.1  
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    24   7.2  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    24   7.2  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    24   7.2  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    24   7.2  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    24   9.5  

>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 31.1 bits (67), Expect = 0.063
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 58  DWDEDPEELFVYRHQRRLSDPSANINNFTRSGWRTKDNRDKSRSENEGLD-SMVSGVAEV 116
           +WD+   +L       +   P   I  FT + W+ KD    + + N  L  +      EV
Sbjct: 266 EWDDPSGKLNAMPVDEKTIPPEERIPRFTAASWKYKDGGVGAFTHNITLQGAKYDTCIEV 325

Query: 117 EAGDLRDDILDHREEPIL 134
           +A      I+D  EEP+L
Sbjct: 326 QADGYYLRIVDLYEEPVL 343


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 15/69 (21%), Positives = 34/69 (49%)

Query: 52  TDMWDSDWDEDPEELFVYRHQRRLSDPSANINNFTRSGWRTKDNRDKSRSENEGLDSMVS 111
           ++M DS+  ++ +E   Y+++ + S  ++  +NF ++      N       NEG + + S
Sbjct: 105 SNMEDSEDKKEEDESSSYKNEFKSSSSASVSSNFEKTSGSDDHNSQSPVPLNEGFEYIAS 164

Query: 112 GVAEVEAGD 120
             +E +  D
Sbjct: 165 SGSEDKNSD 173


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 51  ATDMWDSDWDEDPEELFVYRHQRRLSDPSA 80
           AT  WD+ W +DP  +  +R    ++ P+A
Sbjct: 315 ATITWDNLWTQDPPPMQSFRPNYNIAIPNA 344


>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 48  GLAATDMWDSDWDEDPEELFVYRHQRRLSDPSANINNFTRSGWRTKDNR 96
           GL++ D  DSD+D D  + ++  H+R LS       +  R   + +D R
Sbjct: 385 GLSSRDP-DSDFDSDNVDEYIDDHKRGLSSTERRDLDRVRDKQKKQDQR 432


>SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 81  NINNFTRSGWRTKDNRDKSRSENEGLDSMVS 111
           +I    +S  R  D+R+KSR E   L+S+ S
Sbjct: 82  SIRRILKSSNRPLDDREKSRKEKRWLNSLKS 112


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 15/58 (25%), Positives = 25/58 (43%)

Query: 56  DSDWDEDPEELFVYRHQRRLSDPSANINNFTRSGWRTKDNRDKSRSENEGLDSMVSGV 113
           D+ +  DP      R Q+R +      +N +        N   S+SEN  L S++S +
Sbjct: 332 DTRFVNDPNSTSHDRRQKRPTRRHIPCSNKSSGSSTVLGNNSSSKSENSFLASLISNI 389


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 72  QRRLSDPSANINNFTRSGWRTKDNRDKSRSENEGLDSMVSGVAEVEAGDLRDDILDHREE 131
           QRR S  + ++  FT+       N+++     E +D     V E + G +R  +  + EE
Sbjct: 94  QRRSSWSTIDLERFTKLYRDDYSNKEEEIKAQEDVDVAERRVEEAQNGLVRSILSRYHEE 153

Query: 132 PI 133
            +
Sbjct: 154 QV 155


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 62  DPEELFVYRHQRRLSDPSANINNFTRSGWRTKDNRDKSRS 101
           +P++ F  + QR L++  ++  +F R  W    NRD   S
Sbjct: 361 EPDKFF--QLQRSLTELFSDTMDFLRDAWDNNKNRDNLAS 398


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 97  DKSRSENEGLDSMVSGVAEVEAGDLRDDI 125
           DKS + +  L  +VSG+AE++  D+  +I
Sbjct: 589 DKSMTGSLSLQDLVSGIAELKFRDVMRNI 617


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 14/56 (25%), Positives = 22/56 (39%)

Query: 32  VSRPRGAGVDTPTSEPGLAATDMWDSDWDEDPEELFVYRHQRRLSDPSANINNFTR 87
           +S  R +     +S     A+   + D D +P   F YRH   +   S+N     R
Sbjct: 264 LSNSRHSSFRLASSSTSFPASLEMNVDIDLEPSGYFFYRHNNYIISDSSNTREVLR 319


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 53  DMWDSDWDEDPEELFVYRHQRRLSDPSANINNFTRS 88
           D  D D DE P  L +   +R+  +P+  +N   +S
Sbjct: 628 DESDEDSDEGPTLLSLRMKKRKAVEPNVPVNTHVKS 663


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.132    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,113
Number of Sequences: 5004
Number of extensions: 27089
Number of successful extensions: 49
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 11
length of query: 136
length of database: 2,362,478
effective HSP length: 66
effective length of query: 70
effective length of database: 2,032,214
effective search space: 142254980
effective search space used: 142254980
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 49 (23.8 bits)