GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001090-TA|BGIBMGA001090-PA|undefined
         (136 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39677-1|AAC47961.2|  457|Caenorhabditis elegans Hypothetical pr...    47   4e-06
U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical pr...    30   0.50 
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    29   0.88 
U40059-1|AAA81138.3|  867|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U39855-5|AAA81084.1|  118|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical p...    27   3.6  
Z49938-3|CAA90188.1|  306|Caenorhabditis elegans Hypothetical pr...    27   3.6  
AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical ...    27   3.6  
AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical ...    27   3.6  
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr...    26   8.2  
Z82073-1|CAB04923.1|  444|Caenorhabditis elegans Hypothetical pr...    26   8.2  
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr...    26   8.2  
U21320-6|AAA62538.4|  234|Caenorhabditis elegans Hypothetical pr...    26   8.2  
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ...    26   8.2  

>U39677-1|AAC47961.2|  457|Caenorhabditis elegans Hypothetical
           protein C16E9.2a protein.
          Length = 457

 Score = 47.2 bits (107), Expect = 4e-06
 Identities = 21/34 (61%), Positives = 26/34 (76%)

Query: 13  RCEFVRMKGPGGKGHAEMAVSRPRGAGVDTPTSE 46
           R EFVRM+GP GKG+AEMAV+R    G +TP +E
Sbjct: 281 RQEFVRMRGPQGKGYAEMAVARVPNCGYETPLTE 314


>U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical
           protein F28B4.2 protein.
          Length = 860

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 21  GPGGKGHAEMAVSRPRGAGVDTPTSEPGLAATDMWDSDWDEDPEELFVYRHQRRLSDPSA 80
           GP G        + PRG+  +TP+S     A   W    +  P  LF Y H R  S  S+
Sbjct: 606 GPPGPVPLSGTSTLPRGSNTNTPSS-----ANASWTGGSEFTPSSLFPYSHSRSKSGESS 660


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
            F35A5.1 protein.
          Length = 1274

 Score = 29.5 bits (63), Expect = 0.88
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 25   KGHAEMAVSRPRGAGVDT----PTSEPGLAATDMWDSDWDEDPEE 65
            K  AE    +P+   V      PT  P  AA   W   W++DP+E
Sbjct: 1197 KAPAEKPTEKPKPKEVSKEPPKPTEPPKPAAPKKWKPPWEDDPDE 1241



 Score = 27.1 bits (57), Expect = 4.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 43   PTSEPGLAATDMWDSDWDEDPEE 65
            P   P  AA   W   WD+DP+E
Sbjct: 1139 PEKAPEPAAPKKWKPVWDDDPDE 1161


>U40059-1|AAA81138.3|  867|Caenorhabditis elegans Hypothetical
           protein K03C7.1 protein.
          Length = 867

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 31  AVSRPRGAGVDTPTSEPGLAATDMWDSDWDEDPEE 65
           A  +P    +  P   P  AA   W   W+EDP+E
Sbjct: 162 APKKPDTEDLADPPEPPKPAAPKKWKPPWEEDPDE 196



 Score = 27.9 bits (59), Expect = 2.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 43  PTSEPGLAATDMWDSDWDEDPEE 65
           P   P  AA   W   W+EDP+E
Sbjct: 256 PAEPPKPAAPKKWKPPWEEDPDE 278



 Score = 27.9 bits (59), Expect = 2.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 43  PTSEPGLAATDMWDSDWDEDPEE 65
           P   P  AA   W   W+EDP+E
Sbjct: 338 PAEPPKPAAPKKWKPPWEEDPDE 360


>U39855-5|AAA81084.1|  118|Caenorhabditis elegans Hypothetical
           protein F18G5.1 protein.
          Length = 118

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 17/83 (20%), Positives = 36/83 (43%)

Query: 52  TDMWDSDWDEDPEELFVYRHQRRLSDPSANINNFTRSGWRTKDNRDKSRSENEGLDSMVS 111
           TD +++D +   E +++Y   RR+S  +          +   +N   S  E E  +  V 
Sbjct: 24  TDSYNNDIEGTKEVIYLYIQPRRISIYAPKFKYGPNRQYSDDENETLSSDEKETENFSVQ 83

Query: 112 GVAEVEAGDLRDDILDHREEPIL 134
                  G++++  LD+  E ++
Sbjct: 84  NPFVTHQGNIKNANLDNHTEKVI 106


>Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical
           protein T25E12.4a protein.
          Length = 1101

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 18/72 (25%), Positives = 31/72 (43%)

Query: 61  EDPEELFVYRHQRRLSDPSANINNFTRSGWRTKDNRDKSRSENEGLDSMVSGVAEVEAGD 120
           E+P+E+ V R   R S  +        S   ++D+RD++ + NE +    S         
Sbjct: 67  ENPDEIEVSRVSGRDSSLAFYTTAHETSSMLSRDSRDETLTPNEHIHQASSRRVSANDSV 126

Query: 121 LRDDILDHREEP 132
             D  +D  +EP
Sbjct: 127 FEDGYVDFVDEP 138


>Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical
           protein T25E12.4a protein.
          Length = 1101

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 18/72 (25%), Positives = 31/72 (43%)

Query: 61  EDPEELFVYRHQRRLSDPSANINNFTRSGWRTKDNRDKSRSENEGLDSMVSGVAEVEAGD 120
           E+P+E+ V R   R S  +        S   ++D+RD++ + NE +    S         
Sbjct: 67  ENPDEIEVSRVSGRDSSLAFYTTAHETSSMLSRDSRDETLTPNEHIHQASSRRVSANDSV 126

Query: 121 LRDDILDHREEP 132
             D  +D  +EP
Sbjct: 127 FEDGYVDFVDEP 138


>Z49938-3|CAA90188.1|  306|Caenorhabditis elegans Hypothetical
           protein F38A3.2 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 20  KGPGGKGHAEMAVSRPRGAGVDTPTSEPG 48
           +GP G   ++ A  +P  AG   P  EPG
Sbjct: 261 QGPAGDAGSDGAAGQPGAAGEQGPAGEPG 289


>AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical
           protein T25E12.4a protein.
          Length = 1101

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 18/72 (25%), Positives = 31/72 (43%)

Query: 61  EDPEELFVYRHQRRLSDPSANINNFTRSGWRTKDNRDKSRSENEGLDSMVSGVAEVEAGD 120
           E+P+E+ V R   R S  +        S   ++D+RD++ + NE +    S         
Sbjct: 67  ENPDEIEVSRVSGRDSSLAFYTTAHETSSMLSRDSRDETLTPNEHIHQASSRRVSANDSV 126

Query: 121 LRDDILDHREEP 132
             D  +D  +EP
Sbjct: 127 FEDGYVDFVDEP 138


>AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical
           protein T25E12.4a protein.
          Length = 1101

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 18/72 (25%), Positives = 31/72 (43%)

Query: 61  EDPEELFVYRHQRRLSDPSANINNFTRSGWRTKDNRDKSRSENEGLDSMVSGVAEVEAGD 120
           E+P+E+ V R   R S  +        S   ++D+RD++ + NE +    S         
Sbjct: 67  ENPDEIEVSRVSGRDSSLAFYTTAHETSSMLSRDSRDETLTPNEHIHQASSRRVSANDSV 126

Query: 121 LRDDILDHREEP 132
             D  +D  +EP
Sbjct: 127 FEDGYVDFVDEP 138


>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
            Y16B4A.2 protein.
          Length = 2105

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 54   MWDSDWDEDPEELFVYRHQRRLSDPSANINNFTRSGWRTKDN 95
            +W    DE+P   F Y  Q +  D    I++   S W T+++
Sbjct: 1381 LWVDCADENPANHFRYHTQEKYYDMQNTISDIMDSKWYTQNS 1422


>Z82073-1|CAB04923.1|  444|Caenorhabditis elegans Hypothetical
           protein W06D12.2 protein.
          Length = 444

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 29  EMAVSRPRGAGVDTPTSEPGLAATDMWDSDWDEDPEE 65
           E A  R  G    +      +   + ++  WDEDPEE
Sbjct: 389 ERAKMRNSGTQTTSQIKVASVQTAERYEQTWDEDPEE 425


>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
            Y16B4A.2 protein.
          Length = 2105

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 54   MWDSDWDEDPEELFVYRHQRRLSDPSANINNFTRSGWRTKDN 95
            +W    DE+P   F Y  Q +  D    I++   S W T+++
Sbjct: 1381 LWVDCADENPANHFRYHTQEKYYDMQNTISDIMDSKWYTQNS 1422


>U21320-6|AAA62538.4|  234|Caenorhabditis elegans Hypothetical
           protein K04G7.11 protein.
          Length = 234

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 68  VYRHQRRLSDPSANINNFTRSGWRTKDNRDKSRSENEGLD 107
           V    RR   P  +     R  W+ K+ +D+  +E++GLD
Sbjct: 44  VVEEDRRSKLPKNHEAKKERDQWQVKELQDRKAAEDKGLD 83


>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
            protein Y16B4A.2 protein.
          Length = 2105

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 54   MWDSDWDEDPEELFVYRHQRRLSDPSANINNFTRSGWRTKDN 95
            +W    DE+P   F Y  Q +  D    I++   S W T+++
Sbjct: 1381 LWVDCADENPANHFRYHTQEKYYDMQNTISDIMDSKWYTQNS 1422


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.132    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,627,975
Number of Sequences: 27539
Number of extensions: 155075
Number of successful extensions: 347
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 324
Number of HSP's gapped (non-prelim): 25
length of query: 136
length of database: 12,573,161
effective HSP length: 74
effective length of query: 62
effective length of database: 10,535,275
effective search space: 653187050
effective search space used: 653187050
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)