Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001090-TA|BGIBMGA001090-PA|undefined
(136 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34860.1 68417.m04945 beta-fructofuranosidase, putative / inv... 29 1.5
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami... 29 1.5
At1g26640.1 68414.m03244 aspartate/glutamate/uridylate kinase fa... 29 1.5
At3g13780.1 68416.m01739 expressed protein 28 1.9
At2g34100.1 68415.m04175 expressed protein similar to the Asp-r... 28 1.9
At4g18820.1 68417.m02778 expressed protein 28 2.5
At3g03140.1 68416.m00310 expressed protein 28 2.5
At2g23110.1 68415.m02757 expressed protein 28 2.5
At3g27785.1 68416.m03466 myb family transcription factor (MYB118... 27 3.3
At1g59520.3 68414.m06686 expressed protein (CW7) 27 3.3
At1g59520.2 68414.m06684 expressed protein (CW7) 27 3.3
At1g59520.1 68414.m06685 expressed protein (CW7) 27 3.3
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 27 4.4
At4g28920.1 68417.m04133 hypothetical protein contains Pfam prof... 27 5.9
At2g16440.1 68415.m01883 DNA replication licensing factor, putat... 27 5.9
At1g04080.1 68414.m00396 hydroxyproline-rich glycoprotein family... 27 5.9
At4g20510.1 68417.m02990 expressed protein 26 7.7
At2g19710.1 68415.m02303 expressed protein contains Pfam profi... 26 7.7
At1g20630.1 68414.m02581 catalase 1 identical to catalase 1 GI:2... 26 7.7
>At4g34860.1 68417.m04945 beta-fructofuranosidase, putative /
invertase, putative / saccharase, putative /
beta-fructosidase, putative similar to neutral invertase
[Daucus carota] GI:4200165; contains Pfam profile
PF04853: Plant neutral invertase
Length = 571
Score = 28.7 bits (61), Expect = 1.5
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 27 HAEMAVSRPRG--AGVDTPTSEPGLAATDMWDSDWDEDPEELFVYRHQ 72
HA+ +S G +G +TP S+PG + M WD + +R Q
Sbjct: 77 HADYVISPSFGRRSGFNTPRSQPGFESHPMVGEAWDALRRSMVYFRGQ 124
>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
protein contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 1307
Score = 28.7 bits (61), Expect = 1.5
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 21 GPGGKGHAEMAVSRPRGAGVDTPTSEPGLAATDMWDSDWDEDPEELFVYRHQRRLSDPSA 80
G +G E V RPR + +S LA++ ++SD ++ E++ +YR R S+
Sbjct: 248 GKSYRGDEEREV-RPRRRKSSSCSSYYSLASSGEFESDTEDQEEDVEIYRENVRSSEKKV 306
Query: 81 NINNFTRSGWRTKDNRDKSRSENE 104
+ R R + ++ SR + +
Sbjct: 307 VDQSAKRLKSRKEASQMHSRKKRD 330
>At1g26640.1 68414.m03244 aspartate/glutamate/uridylate kinase
family protein contains Pfam amino acid kinase family
PF00696
Length = 332
Score = 28.7 bits (61), Expect = 1.5
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 9 KTAARCEFVRMKGPGGKGHAEMAVSRPRGAGVDTPTSEPGLAATDMWDSDWDEDPEELFV 68
K++ +FV + G G GH + + S G++ P + G AT + ++ + L +
Sbjct: 83 KSSEFSKFVVVHGAGSFGHFQASRSGVHKGGLEKPIVKAGFVATRISVTNLN-----LEI 137
Query: 69 YRHQRRLSDPSANINNFTRSGWRTKDNRDKSRSENEGLDSMV-SGVAEVEAGD-LRDDIL 126
R R P+ ++ F+ GW T RD + ++ + + SG V GD + D+IL
Sbjct: 138 VRALAREGIPTIGMSPFS-CGWST-SKRDVASADLATVAKTIDSGFVPVLHGDAVLDNIL 195
>At3g13780.1 68416.m01739 expressed protein
Length = 309
Score = 28.3 bits (60), Expect = 1.9
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 53 DMWDSDWDEDPEELFVYRHQRRLSDPSANINNFTRSGWRTKDNRDKSRSENEGLDSMVSG 112
D W + DED +EL V +R+ P+ + TRS +TK + + S S + G + G
Sbjct: 208 DDWSVESDED-KELMV--KSKRVVTPTYS----TRSK-KTKKDSNASSSSSNGAQTKQRG 259
Query: 113 VAEVEAGDLRDDIL 126
A+VE D D+ L
Sbjct: 260 RADVEEEDDDDETL 273
>At2g34100.1 68415.m04175 expressed protein similar to the Asp-rich
region of GP|1633572|U52064
Length = 345
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 53 DMWDSDWDEDPEE--LFVYRHQRRLSD-PSANINNFTRSGWRTKDNRDKSRS 101
D W+ D+D++ EE V+++ +S+ + N+T S + ++ +D S
Sbjct: 195 DSWNEDFDDEDEEADTTVFKYSENMSELDLGSATNYTPSSYDHRNEKDSGSS 246
>At4g18820.1 68417.m02778 expressed protein
Length = 1111
Score = 27.9 bits (59), Expect = 2.5
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 70 RHQRRLSDPSANINNFTRSGWRTKDNRDKSRSENEGLDSMVSGVAEVEAGDLRDDILDHR 129
R R+ D N+N G +K +R SR + + ++ + EV GD DD++
Sbjct: 162 RKSYRIGDDYQNVNEVVSHGSGSKASRRLSRVNDAMVKTLSDQLNEVVVGD-SDDVVSSN 220
Query: 130 EEP 132
P
Sbjct: 221 VRP 223
>At3g03140.1 68416.m00310 expressed protein
Length = 769
Score = 27.9 bits (59), Expect = 2.5
Identities = 16/68 (23%), Positives = 31/68 (45%)
Query: 63 PEELFVYRHQRRLSDPSANINNFTRSGWRTKDNRDKSRSENEGLDSMVSGVAEVEAGDLR 122
P+ F Y + S S+ ++ R + + KSR+E + M + + DL
Sbjct: 214 PDTSFKYLARSNSSASSSGDHSMERPIYTLGKEKTKSRAEAKRTKYMFTPSESNDVSDLH 273
Query: 123 DDILDHRE 130
+++L HR+
Sbjct: 274 ENLLSHRD 281
>At2g23110.1 68415.m02757 expressed protein
Length = 92
Score = 27.9 bits (59), Expect = 2.5
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 15 EFVRMKGPGGKGHAEMAVSRPRGAGVDTPTSEPGL------AATDMWDSD 58
E +MKG G +GH E + GA D PT GL A+TD+ +D
Sbjct: 36 EDYKMKGYGAQGHQEPKLGMGGGA-TDAPTPSGGLGRGGGAASTDLSSTD 84
>At3g27785.1 68416.m03466 myb family transcription factor (MYB118)
contains PFAM profile: PF00249 myb-like DNA binding
domain
Length = 437
Score = 27.5 bits (58), Expect = 3.3
Identities = 14/68 (20%), Positives = 28/68 (41%)
Query: 43 PTSEPGLAATDMWDSDWDEDPEELFVYRHQRRLSDPSANINNFTRSGWRTKDNRDKSRSE 102
PT EP ++ ++ W+ D + F++ + L+ A+ N F N D +
Sbjct: 94 PTIEPNVSHVSHDNTMWENDQNQGFIFGTESTLNQAMADSNQFNMPKPLLSANEDTIMNR 153
Query: 103 NEGLDSMV 110
+ M+
Sbjct: 154 RQNNQVMI 161
>At1g59520.3 68414.m06686 expressed protein (CW7)
Length = 388
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 19 MKGPGGKGHAEMAVS 33
M+GPGG+G E+AVS
Sbjct: 287 MRGPGGRGEVEVAVS 301
>At1g59520.2 68414.m06684 expressed protein (CW7)
Length = 319
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 19 MKGPGGKGHAEMAVS 33
M+GPGG+G E+AVS
Sbjct: 287 MRGPGGRGEVEVAVS 301
>At1g59520.1 68414.m06685 expressed protein (CW7)
Length = 388
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 19 MKGPGGKGHAEMAVS 33
M+GPGG+G E+AVS
Sbjct: 287 MRGPGGRGEVEVAVS 301
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2)
{Homo sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 27.1 bits (57), Expect = 4.4
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 44 TSEPGLAATDMWDSDWDEDPEELFVYRHQRRLSDPSANINNFTRSGWRTKDNRDKSRSEN 103
+S L T W S + +D + + QR SDP+ + + + + ++DN RSE
Sbjct: 86 SSTKRLGVTGRWGSTFWKDCQPM----GQREGSDPAKDSQSGYKEAYHSEDNHSNDRSEK 141
Query: 104 EGLDS 108
LDS
Sbjct: 142 --LDS 144
>At4g28920.1 68417.m04133 hypothetical protein contains Pfam
profile PF04776: Protein of unknown function (DUF626)
Length = 292
Score = 26.6 bits (56), Expect = 5.9
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 49 LAATDMWDSDWDEDPEELFVYRHQRRLSDPSANINNFTRSGWRTKDNRDKS 99
++ D +SD + DPEE VYR Q SD +++ F +G + +D++
Sbjct: 1 MSENDSSESDIEMDPEEEKVYRRQVEESD-GFDVDYFRYAGIKPCPLKDEN 50
>At2g16440.1 68415.m01883 DNA replication licensing factor, putative
similar to SP|P49717 DNA replication licensing factor
MCM4 (CDC21 homolog) {Mus musculus}, SP|P29458 Cdc21
protein {Schizosaccharomyces pombe}; contains Pfam
profile PF00493: MCM2/3/5 family
Length = 847
Score = 26.6 bits (56), Expect = 5.9
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 39 GVDTPTSEPGLAATDMWDSDWDEDPEELFVYRHQRRLSDPSANINNFTRSGWRTKDNRDK 98
G T EP L ++D + D +D FV+ + D + I F + ++N D
Sbjct: 95 GTPMSTDEP-LPSSDDGEEDGGDDTTPTFVWGTNISVQDVKSAIEMFVKHFREARENSDD 153
Query: 99 SRSENEGLDSMVSGVAEVEAGDLRDDILD 127
E + + S + V E+E + D D
Sbjct: 154 LFREGKYMVS-IRKVIEIEGEWIDVDAFD 181
>At1g04080.1 68414.m00396 hydroxyproline-rich glycoprotein family
protein Contains similarity to pre-mRNA processing
protein PRP39 gb L29224 from S. cerevisiae. ESTs
gb|R64908 and gb|T88158, gb|N38703 and gb|AA651043 come
from this gene
Length = 768
Score = 26.6 bits (56), Expect = 5.9
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 77 DPSANINNFTRSGWRTKDNRDKSRSENEGLDSMVSGVAEVEAGDLRDDI 125
D +A+ +G T D S S N DS+V+G A VE G D++
Sbjct: 19 DYNASAATVESTGQETAPIVDASHSVNN--DSLVNGTAPVENGSATDNV 65
>At4g20510.1 68417.m02990 expressed protein
Length = 413
Score = 26.2 bits (55), Expect = 7.7
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 43 PTSEPGLAATDMWDSDWDEDPEELFVYRHQRRLSDPSANINN 84
P SE A + D D DE EL + R R S P N+++
Sbjct: 286 PASEEVNAGLTILDLDKDETVAELGISRRSREGSQPVINLDD 327
>At2g19710.1 68415.m02303 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 937
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 1 MSFGLLGSKTAARCEFVRMKGPGGKGHAEMAVS 33
+ F LLGSKT+A KG K H + + S
Sbjct: 548 VGFSLLGSKTSASAASWSFKGDHSKSHGKHSSS 580
>At1g20630.1 68414.m02581 catalase 1 identical to catalase 1
GI:2511725 from [Arabidopsis thaliana]
Length = 492
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 59 WDEDPEELFVYRHQRRLSDPSANINNFTRSGW 90
WD D +E FV R LS+P + + RS W
Sbjct: 438 WDSDRQERFVKRFVEALSEP--RVTHEIRSIW 467
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.132 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,585,733
Number of Sequences: 28952
Number of extensions: 154796
Number of successful extensions: 328
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 20
length of query: 136
length of database: 12,070,560
effective HSP length: 74
effective length of query: 62
effective length of database: 9,928,112
effective search space: 615542944
effective search space used: 615542944
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)
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