Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001089-TA|BGIBMGA001089-PA|undefined
         (54 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           19   3.0  
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    19   5.2  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 19.4 bits (38), Expect = 3.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 39  IRYDTLTRVYDSRRGT 54
           IR+   T  YD  RGT
Sbjct: 226 IRFQIATGRYDETRGT 241


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 18.6 bits (36), Expect = 5.2
 Identities = 5/14 (35%), Positives = 11/14 (78%)

Query: 1   MYRQVFCDIVVRDG 14
           +YRQ + D++ ++G
Sbjct: 113 VYRQKYKDVIEKEG 126


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.330    0.144    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,525
Number of Sequences: 317
Number of extensions: 239
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 54
length of database: 114,650
effective HSP length: 34
effective length of query: 20
effective length of database: 103,872
effective search space:  2077440
effective search space used:  2077440
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (19.0 bits)
S2: 34 (17.8 bits)