Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001089-TA|BGIBMGA001089-PA|undefined
         (54 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    23   4.9  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    22   8.5  
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch...    22   8.5  

>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 8/26 (30%), Positives = 17/26 (65%)

Query: 12  RDGEMVCVELVARGRGGSAQAVIFLG 37
           +DGE + ++++ARG   S+  ++  G
Sbjct: 878 KDGEGITIKVIARGESDSSVELVVGG 903


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 11/49 (22%), Positives = 19/49 (38%)

Query: 6   FCDIVVRDGEMVCVELVARGRGGSAQAVIFLGSIRYDTLTRVYDSRRGT 54
           F  +V   G +    ++     G     +  GS+ Y T    +D+  GT
Sbjct: 456 FTSVVSASGTVSGEHIIVEPTAGVVTETVVSGSVGYTTTYPAHDTVSGT 504


>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 105

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 1  MYRQVFCDIVVRDGEMVCVELVARGRG 27
          +YR  F  + + D ++ CVE V  G G
Sbjct: 58 LYRVSFRRMRLNDRQLSCVESVTNGIG 84


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.330    0.144    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,028
Number of Sequences: 5004
Number of extensions: 4367
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 3
length of query: 54
length of database: 2,362,478
effective HSP length: 35
effective length of query: 19
effective length of database: 2,187,338
effective search space: 41559422
effective search space used: 41559422
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 45 (22.2 bits)