Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001089-TA|BGIBMGA001089-PA|undefined
         (54 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13438| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)                 26   4.9  
SB_10730| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)                 26   4.9  

>SB_13438| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)
          Length = 672

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 12  RDGEMVCVELVARGRGGSAQAVIFLGSIRYDTLTRVYDSRRG 53
           R+ + V +E + RGRGG    VI L  IR + +T + +   G
Sbjct: 331 RETQRVRLETI-RGRGGRDNEVIVLSVIRREGVTLLREKNSG 371


>SB_10730| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)
          Length = 654

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 12  RDGEMVCVELVARGRGGSAQAVIFLGSIRYDTLTRVYDSRRG 53
           R+ + V +E + RGRGG    VI L  IR + +T + +   G
Sbjct: 316 RETQRVRLETI-RGRGGRDNEVIVLSVIRREGVTLLREKNSG 356


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.330    0.144    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,590,715
Number of Sequences: 59808
Number of extensions: 40120
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 74
Number of HSP's gapped (non-prelim): 2
length of query: 54
length of database: 16,821,457
effective HSP length: 34
effective length of query: 20
effective length of database: 14,787,985
effective search space: 295759700
effective search space used: 295759700
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 52 (25.0 bits)