GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001089-TA|BGIBMGA001089-PA|undefined
         (54 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0561 - 23296977-23297174,23297304-23297431,23297990-232983...    25   7.4  
11_06_0596 + 25385744-25388890                                         25   9.8  

>01_05_0561 -
           23296977-23297174,23297304-23297431,23297990-23298362,
           23298629-23299069
          Length = 379

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 9   IVVRDGEMVCVELVARGRGGSAQAVIF 35
           +VVRDG ++ VE+  RG    A AV+F
Sbjct: 115 VVVRDGRVIGVEVKGRG-VVDADAVVF 140


>11_06_0596 + 25385744-25388890
          Length = 1048

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 18 CVELVARGRGGSAQAVIFLGSIR 40
          CVE  AR R G  +   FLGS+R
Sbjct: 76 CVERYARTRSGRRRRRGFLGSLR 98


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.330    0.144    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,501,652
Number of Sequences: 37544
Number of extensions: 40611
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 2
length of query: 54
length of database: 14,793,348
effective HSP length: 35
effective length of query: 19
effective length of database: 13,479,308
effective search space: 256106852
effective search space used: 256106852
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 51 (24.6 bits)