GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001089-TA|BGIBMGA001089-PA|undefined
         (54 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11680.1 68418.m01365 expressed protein predicted proteins, A...    26   2.6  
At2g45530.1 68415.m05662 zinc finger (C3HC4-type RING finger) fa...    25   6.1  

>At5g11680.1 68418.m01365 expressed protein predicted proteins,
          Arabidopsis thaliana
          Length = 207

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 9  IVVRDGEMVCVELVARGRGG--SAQAVIFLGSIR 40
          ++VRDG    V+ +  G GG   A+ VI+L +IR
Sbjct: 22 VLVRDGVEFEVDKIPGGHGGHVKAKGVIYLSNIR 55


>At2g45530.1 68415.m05662 zinc finger (C3HC4-type RING finger)
          family protein contains Pfam profile: PF00097 zinc
          finger, C3HC4 type (RING finger)
          Length = 240

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 7  CDIVVRDGEMVCVELVARGRGGSAQA 32
          C + ++D E V +EL  + RGG A+A
Sbjct: 74 CRVCLQDKEEVLIELGCQCRGGLAKA 99


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.330    0.144    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,108,316
Number of Sequences: 28952
Number of extensions: 27391
Number of successful extensions: 51
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 2
length of query: 54
length of database: 12,070,560
effective HSP length: 35
effective length of query: 19
effective length of database: 11,057,240
effective search space: 210087560
effective search space used: 210087560
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 51 (24.6 bits)