Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001088-TA|BGIBMGA001088-PA|undefined
         (106 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    23   0.50 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   3.5  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    20   6.2  

>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 0.50
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 59  LSVRLYNKIPQDVQNLHIHRFKKTIK 84
           LS+ L + +P++V N  I R  +T+K
Sbjct: 348 LSLDLLSYVPREVYNKEISRLVETLK 373


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 20.6 bits (41), Expect = 3.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 56  FGCLSVRLY 64
           FGCLS RL+
Sbjct: 271 FGCLSTRLF 279


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 19.8 bits (39), Expect = 6.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query: 86  HLCNKAYYKVN 96
           H+C+K YY V+
Sbjct: 120 HICDKFYYCVD 130


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.135    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,163
Number of Sequences: 317
Number of extensions: 930
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 106
length of database: 114,650
effective HSP length: 49
effective length of query: 57
effective length of database: 99,117
effective search space:  5649669
effective search space used:  5649669
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.6 bits)
S2: 38 (19.4 bits)