Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001088-TA|BGIBMGA001088-PA|undefined
         (106 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    32   0.017
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    28   0.27 
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    26   1.1  
SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein Nnf1|Schizosacch...    25   2.6  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    24   5.9  

>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 32.3 bits (70), Expect = 0.017
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 63  LYNKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVNDHLEDCTK 104
           ++N +P    +  +H  K TI   LC K++  +  H+++ TK
Sbjct: 520 VFNDVPYSEIDSQLHTIKSTIAARLCGKSHIPLVGHMDEQTK 561


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 28.3 bits (60), Expect = 0.27
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 86  HLCNKAYYKVNDHLEDCTKWE 106
           HL  K+YY  N H+  C  WE
Sbjct: 242 HLVQKSYYLQNRHVFPCVHWE 262


>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 33  EGEEMTYPHICFMVDNFDEIRNSF 56
           +G+E  Y H+C  VDN +   + F
Sbjct: 243 DGDEKGYGHVCISVDNINAACSKF 266


>SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein
           Nnf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 51  EIRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKEHL 87
           E R   G   V + NK PQ++   H++  K+ + + L
Sbjct: 84  EFRKLHGESEVDISNKQPQEILKAHLYSHKRELLDKL 120


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 74  LHIHRFKKTIKEHLCNKAYY 93
           LH+HRF + + E+L     Y
Sbjct: 628 LHLHRFHELVSENLAKAVEY 647


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.135    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 520,092
Number of Sequences: 5004
Number of extensions: 19731
Number of successful extensions: 37
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 6
length of query: 106
length of database: 2,362,478
effective HSP length: 63
effective length of query: 43
effective length of database: 2,047,226
effective search space: 88030718
effective search space used: 88030718
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)