Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001088-TA|BGIBMGA001088-PA|undefined
(106 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0426 - 5620980-5621114,5622675-5622886,5623290-5623412,562... 36 0.008
10_01_0016 + 190329-191210,206896-207033,208029-208103,208533-20... 35 0.015
07_01_0985 - 8297560-8297610,8297728-8297939,8298327-8298449,829... 35 0.015
02_01_0679 - 5048653-5051394 29 0.55
11_01_0780 - 6531579-6531608,6531732-6532064,6533219-6533325,653... 29 0.97
11_06_0760 + 27017956-27018433,27018487-27019234,27023760-270243... 28 1.3
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 28 1.7
05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603 28 1.7
04_04_0705 - 27406405-27406424,27406425-27409260 28 1.7
11_01_0758 + 6362500-6363233,6363709-6365500 27 3.0
09_02_0559 + 10666974-10667078,10667251-10667614,10671204-106715... 27 3.9
11_06_0707 + 26467214-26470309 26 5.2
11_06_0698 + 26385989-26389090 26 5.2
01_06_1300 + 36116511-36116636,36116672-36116734,36117782-361178... 26 6.8
10_02_0129 + 5584585-5584732,5586567-5586968,5587038-5587106,558... 25 9.0
09_06_0260 - 21911358-21911438,21911715-21911828,21911911-219120... 25 9.0
08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617 25 9.0
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435... 25 9.0
07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422... 25 9.0
>04_01_0426 -
5620980-5621114,5622675-5622886,5623290-5623412,
5623705-5623759,5624530-5624676,5624841-5624915,
5624987-5625046,5625334-5625519
Length = 330
Score = 35.5 bits (78), Expect = 0.008
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 5/44 (11%)
Query: 11 RAVVSTVQVYASPSRRK--MDTKGEGEEM-TYPHICFMVDNFDE 51
RAV TV YASPSR +D + E + YP+ICF +D+FD+
Sbjct: 61 RAVTKTV--YASPSRVNFHLDRRKAVETVPAYPNICFSIDDFDD 102
>10_01_0016 +
190329-191210,206896-207033,208029-208103,208533-208639,
209193-209250,210183-210242,210320-210394,210504-210641,
211766-211820,212134-212256,212645-212883
Length = 649
Score = 34.7 bits (76), Expect = 0.015
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 16 TVQVYASPSRRK--MDTKGEGEEM-TYPHICFMVDNFDE 51
T VYASPSR +D + E + YP+ICF VD+FD+
Sbjct: 422 TKTVYASPSRVNFHLDRRKAVETVPAYPNICFSVDDFDD 460
>07_01_0985 -
8297560-8297610,8297728-8297939,8298327-8298449,
8298763-8298817,8299940-8300077,8300187-8300261,
8300339-8300398,8301335-8301392,8301948-8302054,
8302484-8302558,8302643-8302838,8304222-8304301,
8308887-8309757,8310672-8310679
Length = 702
Score = 34.7 bits (76), Expect = 0.015
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 16 TVQVYASPSRRK--MDTKGEGEEM-TYPHICFMVDNFDE 51
T VYASPSR +D + E + YP+ICF VD+FD+
Sbjct: 467 TKTVYASPSRVNFHLDRRKAVETVPAYPNICFSVDDFDD 505
>02_01_0679 - 5048653-5051394
Length = 913
Score = 29.5 bits (63), Expect = 0.55
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 65 NKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVNDHLED 101
+KIP D+ +H + +KE L NK Y V D + D
Sbjct: 252 SKIPTDLDTMHHGKLNDELKEVLSNKKYLIVLDDVWD 288
>11_01_0780 -
6531579-6531608,6531732-6532064,6533219-6533325,
6534267-6534316,6535110-6537065,6537458-6538209
Length = 1075
Score = 28.7 bits (61), Expect = 0.97
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 62 RLYNKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVNDHLEDCTKWE 106
R +N++P D + I++H+ +K Y+ V D L + T W+
Sbjct: 224 RRHNRLPAD--RCTVQDLIDNIRDHIQDKRYFIVIDDLWETTSWD 266
>11_06_0760 +
27017956-27018433,27018487-27019234,27023760-27024378,
27030755-27032440
Length = 1176
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 59 LSVRLYNKIPQ-DVQNLHIHRFKKTIKEHLCNKAYYKVNDHLEDCTKWE 106
++++ NK + ++Q + K ++EHL K Y+ + D + T WE
Sbjct: 376 INIQTMNKPGEKNIQTMKRDGLSKLLQEHLNQKRYFLLIDDVWSATTWE 424
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 83 IKEHLCNKAYYKVNDHLEDCTKWE 106
++EHL NK Y+ V D L D W+
Sbjct: 241 LREHLKNKRYFVVIDDLWDAKAWK 264
>05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603
Length = 1132
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 66 KIPQDVQNLHIHRFKKTIKEHLCNKAYYKVNDHLEDCTKWE 106
++ Q N +H +I+ HL +K Y + D L D W+
Sbjct: 253 RLQQPPDNWKLHSLISSIRTHLQDKRYLIIIDDLWDICTWD 293
>04_04_0705 - 27406405-27406424,27406425-27409260
Length = 951
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 67 IPQDVQNLHIHRFKKTIKEHLCNKAYYKVNDHLEDCTKW 105
+P DV N+ + ++ HL K Y + D + D W
Sbjct: 249 VPWDVDNMDYRSLVEALRGHLAKKRYLLLLDDVWDAHAW 287
>11_01_0758 + 6362500-6363233,6363709-6365500
Length = 841
Score = 27.1 bits (57), Expect = 3.0
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 69 QDVQNLHIHRFKKTIKEHLCNKAYYKVNDHLEDCTKWE 106
Q + +H + +++HL +K Y+ + + L D + W+
Sbjct: 223 QQPEVCEVHNLLEDLRKHLLDKRYFIIVEDLWDTSVWD 260
>09_02_0559 +
10666974-10667078,10667251-10667614,10671204-10671541,
10671701-10671706,10672019-10672255
Length = 349
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 1 MIGCNANVKRRAVVSTVQVYASPSRRKMDTKGEGEEMTY 39
+I CNA+ RR + ++ +++ D K E E+MTY
Sbjct: 281 LIACNASTGRR-----MDLFLEQRQKQSDEKTESEKMTY 314
>11_06_0707 + 26467214-26470309
Length = 1031
Score = 26.2 bits (55), Expect = 5.2
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 7 NVKRRAVVSTVQVYASPSRRKM--DTKGEGEEMTYPHICFMVDNFDEIRNSFGCLSVRLY 64
NV + A+V T V + +K+ D K EG + H + + + R+S L L
Sbjct: 193 NVYKLAIVGTGGVGKTTLAQKIFNDKKLEGR---FDHHAWACVSKEYSRDSL--LRQVLR 247
Query: 65 NKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVNDHLEDCTKW 105
N + Q+ + ++ IK H+ NK+++ V D + + W
Sbjct: 248 NMGIRYEQDESVPELQRKIKSHIANKSFFLVLDDVWNSEAW 288
>11_06_0698 + 26385989-26389090
Length = 1033
Score = 26.2 bits (55), Expect = 5.2
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 7 NVKRRAVVSTVQVYASPSRRKM--DTKGEGEEMTYPHICFMVDNFDEIRNSFGCLSVRLY 64
NV + A+V T V + +K+ D K EG + H + + + R+S L L
Sbjct: 193 NVYKLAIVGTGGVGKTTLAQKIFNDKKLEGR---FDHHAWACVSKEYSRDSL--LRQVLR 247
Query: 65 NKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVNDHLEDCTKW 105
N + Q+ + ++ IK H+ NK+++ V D + + W
Sbjct: 248 NMGIRYEQDESVPELQRKIKSHIANKSFFLVLDDVWNSEAW 288
>01_06_1300 +
36116511-36116636,36116672-36116734,36117782-36117833,
36118144-36118224,36118651-36118775,36118831-36118934,
36119487-36119615,36119899-36121054
Length = 611
Score = 25.8 bits (54), Expect = 6.8
Identities = 8/37 (21%), Positives = 22/37 (59%)
Query: 16 TVQVYASPSRRKMDTKGEGEEMTYPHICFMVDNFDEI 52
T+Q+ A+PS+ + + + E + +C+ + N +++
Sbjct: 368 TIQLEAAPSKGEAELSLKNEARSLGPLCYQIPNMEDV 404
>10_02_0129 + 5584585-5584732,5586567-5586968,5587038-5587106,
5587181-5587234,5587309-5588214,5588313-5590283,
5590833-5591235,5591845-5591857
Length = 1321
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 8 VKRRAVVSTVQVYASPSRRKMDTKGEGEEMTY 39
+ RA++ST Y KM + GEEM Y
Sbjct: 1230 ITSRAILSTRNEYVDQINMKMIDRFRGEEMLY 1261
>09_06_0260 -
21911358-21911438,21911715-21911828,21911911-21912033,
21912342-21912419,21912498-21912647,21913505-21913601,
21913679-21913860,21913899-21913982,21914243-21914303,
21914414-21914506,21914588-21914782,21914937-21915006,
21915536-21915572,21915654-21915737,21915828-21915885,
21916008-21916084,21916185-21916244,21916325-21916687
Length = 668
Score = 25.4 bits (53), Expect = 9.0
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 4 CNANVKRRAVVSTVQVYASPSRRKMDTKGEG-EEMTYPHICFMVDNFDEIRNSFGCLSVR 62
C ANV R + T Y S + D G G T H+ +N E +++
Sbjct: 314 CRANVAVRRELHTPASYRSCIHLEFDISGTGLTYETGDHVGVYAENCTETVEESALIALA 373
Query: 63 LYNKIPQDVQNL 74
+ P+D + L
Sbjct: 374 SHASDPKDAERL 385
>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
Length = 988
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 72 QNLHIHRFKKTIKEHLCNKAYYKVNDHLEDCTKWE 106
Q L H+ IKE+L N Y+ V D + + W+
Sbjct: 266 QPLEDHQLINMIKEYLKNNRYFIVIDDIWSKSAWQ 300
>08_01_0501 +
4345522-4345720,4346598-4347167,4347294-4347366,
4351133-4353092,4353465-4353840,4353932-4354326,
4354597-4354765,4355444-4355518,4357699-4357826,
4357988-4358213,4358290-4358417,4358505-4358768
Length = 1520
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 83 IKEHLCNKAYYKVNDHLEDCTKWE 106
I++HL +K Y+ V D + D WE
Sbjct: 273 IRDHLKDKRYFVVIDDVWDVEAWE 296
>07_03_0203 +
15138864-15140452,15140629-15140726,15141924-15142235,
15142437-15142749,15144025-15146023,15147033-15147068
Length = 1448
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 83 IKEHLCNKAYYKVNDHLEDCTKW 105
++EHL NK Y+ + D L D + W
Sbjct: 763 LREHLNNKRYFIILDDLWDESVW 785
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.135 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,161,443
Number of Sequences: 37544
Number of extensions: 113833
Number of successful extensions: 262
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 20
length of query: 106
length of database: 14,793,348
effective HSP length: 72
effective length of query: 34
effective length of database: 12,090,180
effective search space: 411066120
effective search space used: 411066120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)
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