GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001088-TA|BGIBMGA001088-PA|undefined
         (106 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28584| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.14 
SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)                   29   0.76 
SB_20871| Best HMM Match : Cauli_DNA-bind (HMM E-Value=0.99)           27   2.3  
SB_11648| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.3  
SB_58744| Best HMM Match : ResIII (HMM E-Value=0.14)                   27   4.0  
SB_1170| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.0  
SB_54371| Best HMM Match : ChaB (HMM E-Value=3.9)                      26   5.3  
SB_35564| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.1  
SB_29282| Best HMM Match : Vicilin_N (HMM E-Value=5)                   26   7.1  
SB_15593| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.1  
SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14)                26   7.1  
SB_6821| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.3  
SB_20506| Best HMM Match : Lig_chan (HMM E-Value=2.7)                  25   9.3  

>SB_28584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 53  RNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVNDHLEDC 102
           RNSF  +  R++N++PQ ++     +FK  ++  L +    K +D+++ C
Sbjct: 122 RNSFSRVGARVWNELPQSLRESSKKQFKTKLRSALVD-ILIKYDDYIDVC 170


>SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)
          Length = 781

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 52  IRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKE 85
           +++++G L  +  NK   DVQ +H+ +FK+ I E
Sbjct: 648 LKSAYGLLCCKR-NKCELDVQRMHLRKFKRQISE 680


>SB_20871| Best HMM Match : Cauli_DNA-bind (HMM E-Value=0.99)
          Length = 252

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 56  FGCLSVRLYNKIPQDVQNLHIHRFKKTIKEHLCN 89
           F  +S R + KIP  +++L  + F + +K HL N
Sbjct: 216 FTAMSSRFWEKIPNCIKSLPYNSFIEQLKLHLLN 249


>SB_11648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 1   MIGCNANVKRRAVVSTVQVYAS-PSRRKMDTKGEGEEMTYPHICFMVDNF 49
           ++G   N K    +  VQ Y + PS   + T  E   MTY  +   +D F
Sbjct: 177 IVGVEMNDKSEISLRAVQPYNNQPSSENVSTGDENAAMTYRELSLKLDKF 226


>SB_58744| Best HMM Match : ResIII (HMM E-Value=0.14)
          Length = 831

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 4   CNANVKRRAVVSTVQVYASPSRRKMDTK--GEGEEMTYPHICFMVDNFDEIRNSFGCLSV 61
           C A      +++ ++ YA  +R+K  TK  G    +T  H+  M+   ++     G L  
Sbjct: 732 CRATPSEELIIARIKRYAIDNRQKGRTKYTGSHHVLTVDHVLGMIAEAEKKCTVCGTLLF 791

Query: 62  RLYNK 66
           + Y K
Sbjct: 792 KGYTK 796


>SB_1170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 63  LYNKIPQDVQNLHIHR----FKKTIKEHLCNKAYYKVNDHLEDCT 103
           LY+  P D    H+HR    F K I+      A+ KV+D   D T
Sbjct: 252 LYSATPDDDVFRHVHRGVHGFVKNIQGEPLANAFIKVSDRRHDVT 296


>SB_54371| Best HMM Match : ChaB (HMM E-Value=3.9)
          Length = 557

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 78  RFKKTIKEHLCNKAYYKVNDHLED 101
           +F+K  + H+CNK Y K +  + D
Sbjct: 174 QFQKAQESHICNKEYTKKDTRVRD 197


>SB_35564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1028

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 71  VQNLHIHR-FKKTIKEHLCNKAYYKVNDHLED 101
           VQ  H    F    KEHLC +  Y ++D  ED
Sbjct: 97  VQTQHFKEVFDILDKEHLCGEPEYSMHDRSED 128


>SB_29282| Best HMM Match : Vicilin_N (HMM E-Value=5)
          Length = 106

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 34  GEEMTYPHICFMVDNFDEIRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKEHLCNKAYY 93
           GE+  Y    FM    +E++     +  + +NK P+ +      +F+K  + H+CNK Y 
Sbjct: 38  GEKAKYK---FMEKMLEEVKYCKNIMR-KHFNKTPK-MSKHDEDQFQKAQECHVCNKEYT 92

Query: 94  KVNDHLED 101
           K +  + D
Sbjct: 93  KKDTRVRD 100


>SB_15593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1593

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 65  NKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVNDHLEDCTKWE 106
           N +P    N+H    K+ +K+ + +  +++    ++ C KWE
Sbjct: 732 NNVPDS--NVHRKSLKQLLKDEIPDVDFHRPKWSIKKCKKWE 771


>SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14)
          Length = 1087

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 34  GEEMTYPHICFMVDNFDEIRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKEHLCNKAYY 93
           GE+  Y    FM    +E++     +  + +NK P+ +      +F+K  + H+CNK Y 
Sbjct: 569 GEKAKYK---FMEKMLEEVKYCKNIMR-KHFNKTPK-MSKHDEDQFQKAQECHVCNKEYT 623

Query: 94  KVNDHLED 101
           K +  + D
Sbjct: 624 KKDTRVRD 631


>SB_6821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 72 QNLHIHRFKKTIKEHLCNKAYYKVN 96
          QNLH HR K   K  L    + KVN
Sbjct: 4  QNLHEHRRKSESKPRLVQPQFRKVN 28


>SB_20506| Best HMM Match : Lig_chan (HMM E-Value=2.7)
          Length = 570

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 47  DNFDEIRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKEHLCN 89
           D  DE R   GCLS+R Y  + +        R +  +  HL +
Sbjct: 415 DQTDERRTGDGCLSIREYRTLREHRSRSFATRSQTHLFRHLAS 457


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.135    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,804,731
Number of Sequences: 59808
Number of extensions: 140253
Number of successful extensions: 273
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 266
Number of HSP's gapped (non-prelim): 13
length of query: 106
length of database: 16,821,457
effective HSP length: 72
effective length of query: 34
effective length of database: 12,515,281
effective search space: 425519554
effective search space used: 425519554
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)