GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001088-TA|BGIBMGA001088-PA|undefined
         (106 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118664-1|AAM50033.1|  889|Drosophila melanogaster SD21944p pro...    77   3e-15
AE013599-2408|AAF57912.1|  889|Drosophila melanogaster CG9646-PA...    77   3e-15
AE014297-2336|AAF55406.2|  225|Drosophila melanogaster CG31418-P...    29   1.6  
AY118380-1|AAM48409.1|  240|Drosophila melanogaster RE26525p pro...    26   8.4  
AE014297-724|AAF54211.2|  240|Drosophila melanogaster CG11672-PA...    26   8.4  
AE014296-2433|AAF49702.1| 2061|Drosophila melanogaster CG9425-PA...    26   8.4  
AE014296-2432|AAS65008.1| 2103|Drosophila melanogaster CG9425-PB...    26   8.4  

>AY118664-1|AAM50033.1|  889|Drosophila melanogaster SD21944p
           protein.
          Length = 889

 Score = 77.4 bits (182), Expect = 3e-15
 Identities = 32/35 (91%), Positives = 35/35 (100%)

Query: 18  QVYASPSRRKMDTKGEGEEMTYPHICFMVDNFDEI 52
           +VYASPSRRKMDTKGEGEE+TYPHICFMVDNFDE+
Sbjct: 156 RVYASPSRRKMDTKGEGEEITYPHICFMVDNFDEV 190


>AE013599-2408|AAF57912.1|  889|Drosophila melanogaster CG9646-PA
           protein.
          Length = 889

 Score = 77.4 bits (182), Expect = 3e-15
 Identities = 32/35 (91%), Positives = 35/35 (100%)

Query: 18  QVYASPSRRKMDTKGEGEEMTYPHICFMVDNFDEI 52
           +VYASPSRRKMDTKGEGEE+TYPHICFMVDNFDE+
Sbjct: 156 RVYASPSRRKMDTKGEGEEITYPHICFMVDNFDEV 190


>AE014297-2336|AAF55406.2|  225|Drosophila melanogaster CG31418-PA
           protein.
          Length = 225

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 51  EIRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVNDHLED 101
           E+R +FGC S  LY     DV  + +H  +   +  + +K  YK+  H+ED
Sbjct: 105 ELRTAFGC-SKPLYPP-HVDVNRVPVHHSRLNGERIVHDKGIYKLYHHVED 153


>AY118380-1|AAM48409.1|  240|Drosophila melanogaster RE26525p
          protein.
          Length = 240

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 29 DTKGEGEEMTYPHICFMVDNFDEIRNSFG-CLSVRLYNKIPQDVQNL 74
          +TK E E   Y  +  +VDN  EI  S     S++L  KI +  QN+
Sbjct: 25 ETKMETETTNYGPVTMVVDNLAEIAVSVSDDTSIQLEEKINRTRQNI 71


>AE014297-724|AAF54211.2|  240|Drosophila melanogaster CG11672-PA
          protein.
          Length = 240

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 29 DTKGEGEEMTYPHICFMVDNFDEIRNSFG-CLSVRLYNKIPQDVQNL 74
          +TK E E   Y  +  +VDN  EI  S     S++L  KI +  QN+
Sbjct: 25 ETKMETETTNYGPVTMVVDNLAEIAVSVSDDTSIQLEEKINRTRQNI 71


>AE014296-2433|AAF49702.1| 2061|Drosophila melanogaster CG9425-PA,
           isoform A protein.
          Length = 2061

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 70  DVQNLHIHRFKKTIKEHLCNKAYYKVNDH 98
           DV N  + RF+ TI  HL  +AY    +H
Sbjct: 557 DVANTQLTRFETTIGTHLKTEAYLSDLEH 585


>AE014296-2432|AAS65008.1| 2103|Drosophila melanogaster CG9425-PB,
           isoform B protein.
          Length = 2103

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 70  DVQNLHIHRFKKTIKEHLCNKAYYKVNDH 98
           DV N  + RF+ TI  HL  +AY    +H
Sbjct: 557 DVANTQLTRFETTIGTHLKTEAYLSDLEH 585


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.322    0.135    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,450,948
Number of Sequences: 52641
Number of extensions: 203969
Number of successful extensions: 457
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 7
length of query: 106
length of database: 24,830,863
effective HSP length: 74
effective length of query: 32
effective length of database: 20,935,429
effective search space: 669933728
effective search space used: 669933728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)