BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001088-TA|BGIBMGA001088-PA|undefined (106 letters) Database: celegans 27,539 sequences; 12,573,161 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U39677-1|AAC47961.2| 457|Caenorhabditis elegans Hypothetical pr... 54 2e-08 Z81017-4|CAB02668.1| 181|Caenorhabditis elegans Hypothetical pr... 27 2.7 U53150-9|AAA96129.1| 106|Caenorhabditis elegans Hypothetical pr... 27 3.5 Z81493-4|CAB04041.1| 165|Caenorhabditis elegans Hypothetical pr... 26 4.7 Z22177-6|CAA80150.1| 576|Caenorhabditis elegans Hypothetical pr... 26 4.7 AF095787-1|AAC64972.1| 563|Caenorhabditis elegans EAT-4 protein. 26 4.7 >U39677-1|AAC47961.2| 457|Caenorhabditis elegans Hypothetical protein C16E9.2a protein. Length = 457 Score = 54.0 bits (124), Expect = 2e-08 Identities = 21/37 (56%), Positives = 30/37 (81%) Query: 18 QVYASPSRRKMDTKGEGEEMTYPHICFMVDNFDEIRN 54 +V+ SPSRR+MD+KGE EE+TYP + F +D F+E+ N Sbjct: 183 RVFPSPSRRRMDSKGENEEITYPKLYFAIDGFEEVFN 219 >Z81017-4|CAB02668.1| 181|Caenorhabditis elegans Hypothetical protein F58A3.3 protein. Length = 181 Score = 27.1 bits (57), Expect = 2.7 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Query: 53 RNSFGCLSVRLYNKIPQDVQNLHIHRFKK--TIKEHLCNKAYYKV-NDHLED 101 R FG + +P+ Q++HI RF + +++ C+ +Y+V H ED Sbjct: 87 RKIFGIGVAPVTEYLPKSEQDVHIQRFNRNESVRLSRCSTKHYEVIKTHSED 138 >U53150-9|AAA96129.1| 106|Caenorhabditis elegans Hypothetical protein F20A1.8 protein. Length = 106 Score = 26.6 bits (56), Expect = 3.5 Identities = 10/29 (34%), Positives = 15/29 (51%) Query: 76 IHRFKKTIKEHLCNKAYYKVNDHLEDCTK 104 + R+K EH+ K YY + +H E K Sbjct: 27 VDRYKNERMEHVRGKRYYIITEHAEQVKK 55 >Z81493-4|CAB04041.1| 165|Caenorhabditis elegans Hypothetical protein F01D5.5 protein. Length = 165 Score = 26.2 bits (55), Expect = 4.7 Identities = 7/22 (31%), Positives = 14/22 (63%) Query: 83 IKEHLCNKAYYKVNDHLEDCTK 104 +K C+ +YK +D +++C K Sbjct: 114 VKNGFCSNCFYKCSDRIKNCAK 135 >Z22177-6|CAA80150.1| 576|Caenorhabditis elegans Hypothetical protein ZK512.6 protein. Length = 576 Score = 26.2 bits (55), Expect = 4.7 Identities = 11/34 (32%), Positives = 15/34 (44%) Query: 52 IRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKE 85 IR +FG +Y +H+H F TI E Sbjct: 86 IRCNFGAAKTHMYKNYTDPYGKVHMHEFNWTIDE 119 >AF095787-1|AAC64972.1| 563|Caenorhabditis elegans EAT-4 protein. Length = 563 Score = 26.2 bits (55), Expect = 4.7 Identities = 11/34 (32%), Positives = 15/34 (44%) Query: 52 IRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKE 85 IR +FG +Y +H+H F TI E Sbjct: 73 IRCNFGAAKTHMYKNYTDPYGKVHMHEFNWTIDE 106 Database: celegans Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 12,573,161 Number of sequences in database: 27,539 Lambda K H 0.322 0.135 0.425 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,832,311 Number of Sequences: 27539 Number of extensions: 107707 Number of successful extensions: 241 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 236 Number of HSP's gapped (non-prelim): 6 length of query: 106 length of database: 12,573,161 effective HSP length: 71 effective length of query: 35 effective length of database: 10,617,892 effective search space: 371626220 effective search space used: 371626220 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.9 bits) S2: 53 (25.4 bits)
- SilkBase 1999-2023 -