GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001088-TA|BGIBMGA001088-PA|undefined
         (106 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39677-1|AAC47961.2|  457|Caenorhabditis elegans Hypothetical pr...    54   2e-08
Z81017-4|CAB02668.1|  181|Caenorhabditis elegans Hypothetical pr...    27   2.7  
U53150-9|AAA96129.1|  106|Caenorhabditis elegans Hypothetical pr...    27   3.5  
Z81493-4|CAB04041.1|  165|Caenorhabditis elegans Hypothetical pr...    26   4.7  
Z22177-6|CAA80150.1|  576|Caenorhabditis elegans Hypothetical pr...    26   4.7  
AF095787-1|AAC64972.1|  563|Caenorhabditis elegans EAT-4 protein.      26   4.7  

>U39677-1|AAC47961.2|  457|Caenorhabditis elegans Hypothetical
           protein C16E9.2a protein.
          Length = 457

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 21/37 (56%), Positives = 30/37 (81%)

Query: 18  QVYASPSRRKMDTKGEGEEMTYPHICFMVDNFDEIRN 54
           +V+ SPSRR+MD+KGE EE+TYP + F +D F+E+ N
Sbjct: 183 RVFPSPSRRRMDSKGENEEITYPKLYFAIDGFEEVFN 219


>Z81017-4|CAB02668.1|  181|Caenorhabditis elegans Hypothetical
           protein F58A3.3 protein.
          Length = 181

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 53  RNSFGCLSVRLYNKIPQDVQNLHIHRFKK--TIKEHLCNKAYYKV-NDHLED 101
           R  FG     +   +P+  Q++HI RF +  +++   C+  +Y+V   H ED
Sbjct: 87  RKIFGIGVAPVTEYLPKSEQDVHIQRFNRNESVRLSRCSTKHYEVIKTHSED 138


>U53150-9|AAA96129.1|  106|Caenorhabditis elegans Hypothetical
           protein F20A1.8 protein.
          Length = 106

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 76  IHRFKKTIKEHLCNKAYYKVNDHLEDCTK 104
           + R+K    EH+  K YY + +H E   K
Sbjct: 27  VDRYKNERMEHVRGKRYYIITEHAEQVKK 55


>Z81493-4|CAB04041.1|  165|Caenorhabditis elegans Hypothetical
           protein F01D5.5 protein.
          Length = 165

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 83  IKEHLCNKAYYKVNDHLEDCTK 104
           +K   C+  +YK +D +++C K
Sbjct: 114 VKNGFCSNCFYKCSDRIKNCAK 135


>Z22177-6|CAA80150.1|  576|Caenorhabditis elegans Hypothetical
           protein ZK512.6 protein.
          Length = 576

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 52  IRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKE 85
           IR +FG     +Y         +H+H F  TI E
Sbjct: 86  IRCNFGAAKTHMYKNYTDPYGKVHMHEFNWTIDE 119


>AF095787-1|AAC64972.1|  563|Caenorhabditis elegans EAT-4 protein.
          Length = 563

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 52  IRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKE 85
           IR +FG     +Y         +H+H F  TI E
Sbjct: 73  IRCNFGAAKTHMYKNYTDPYGKVHMHEFNWTIDE 106


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.135    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,311
Number of Sequences: 27539
Number of extensions: 107707
Number of successful extensions: 241
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 6
length of query: 106
length of database: 12,573,161
effective HSP length: 71
effective length of query: 35
effective length of database: 10,617,892
effective search space: 371626220
effective search space used: 371626220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)