GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001088-TA|BGIBMGA001088-PA|undefined
         (106 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   3.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   4.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   5.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   7.3  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               19   9.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   9.6  

>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
          protein.
          Length = 81

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 51 EIRNSFGC-LSVRLYNKIPQDVQNLHIHRFKKTIKEHLCNKAY 92
          + + SF C    ++Y  +      +HI       K HLC KA+
Sbjct: 12 QAKKSFSCKYCEKVY--VSLGALKMHIRTHTLPCKCHLCGKAF 52


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 56  FGCLSVRLY 64
           FGCLS RL+
Sbjct: 275 FGCLSTRLF 283


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 11  RAVVSTVQVYASPSRRKMDTKGEGEEM 37
           R V ST+Q    P+ R +  + + EEM
Sbjct: 120 RPVFSTLQRAEYPTNRSLFIREQTEEM 146


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 89  NKAYYKVNDHLED 101
           NK  YK ND++ D
Sbjct: 939 NKKVYKQNDYIVD 951


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 7/30 (23%), Positives = 15/30 (50%)

Query: 50  DEIRNSFGCLSVRLYNKIPQDVQNLHIHRF 79
           D  +N   CL+ + +++   D    HI ++
Sbjct: 103 DNAKNEDKCLTAQKFSRCVIDYVKFHITQY 132


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 62  RLYNKIPQDVQNLHIHR 78
           RL   +  D++N HI R
Sbjct: 146 RLMRCLHHDIENAHIRR 162


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.135    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,140
Number of Sequences: 429
Number of extensions: 1135
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 106
length of database: 140,377
effective HSP length: 50
effective length of query: 56
effective length of database: 118,927
effective search space:  6659912
effective search space used:  6659912
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.6 bits)
S2: 38 (19.4 bits)