GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001088-TA|BGIBMGA001088-PA|undefined
         (106 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g59520.2 68414.m06684 expressed protein (CW7)                       36   0.004
At1g59520.1 68414.m06685 expressed protein (CW7)                       36   0.004
At1g59520.3 68414.m06686 expressed protein (CW7)                       34   0.022
At2g43130.1 68415.m05356 Ras-related protein (ARA-4) / small GTP...    28   1.1  
At1g31080.1 68414.m03805 F-box family protein contains Pfam prof...    27   2.5  
At5g50990.1 68418.m06322 pentatricopeptide (PPR) repeat-containi...    27   3.3  
At3g12145.1 68416.m01513 polygalacturonase inhibitor, putative /...    26   4.4  
At2g38170.3 68415.m04686 calcium exchanger (CAX1) identical to h...    26   4.4  
At5g16900.1 68418.m01981 leucine-rich repeat protein kinase, put...    26   5.8  
At5g12110.1 68418.m01422 elongation factor 1B alpha-subunit 1 (e...    26   5.8  
At4g36900.1 68417.m05231 AP2 domain-containing protein RAP2.10 (...    26   5.8  
At3g14310.1 68416.m01810 pectinesterase family protein contains ...    26   5.8  

>At1g59520.2 68414.m06684 expressed protein (CW7)
          Length = 319

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 20/35 (57%), Positives = 23/35 (65%), Gaps = 3/35 (8%)

Query: 19  VYASPSRRK--MDTKGEGEEM-TYPHICFMVDNFD 50
           VYASPSR    +D+K E E    YP ICF VD+FD
Sbjct: 160 VYASPSRVNFHLDSKKEVETTPAYPEICFAVDDFD 194


>At1g59520.1 68414.m06685 expressed protein (CW7)
          Length = 388

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 20/35 (57%), Positives = 23/35 (65%), Gaps = 3/35 (8%)

Query: 19  VYASPSRRK--MDTKGEGEEM-TYPHICFMVDNFD 50
           VYASPSR    +D+K E E    YP ICF VD+FD
Sbjct: 160 VYASPSRVNFHLDSKKEVETTPAYPEICFAVDDFD 194


>At1g59520.3 68414.m06686 expressed protein (CW7)
          Length = 388

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 3/35 (8%)

Query: 19  VYASPSRRK--MDTKGEGEEM-TYPHICFMVDNFD 50
           VYASPSR    +D+K   E    YP ICF VD+FD
Sbjct: 160 VYASPSRVNFHLDSKKAMETTPAYPEICFAVDDFD 194


>At2g43130.1 68415.m05356 Ras-related protein (ARA-4) / small
           GTP-binding protein, putative identical to SP:P28187
           Ras-related protein ARA-4 {Arabidopsis thaliana}
          Length = 214

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 5   NANVKRRAVVSTVQVYASPSRRKMDTKGEGEEMTYPHICFMVDNFDEIRNSFGCLS 60
           + NVK    +   ++Y++ SR+++++    EE+T   +  +V N +E   +F C S
Sbjct: 159 STNVKTAFEMVIREIYSNISRKQLNSDSYKEELTVNRVS-LVKNENEGTKTFSCCS 213


>At1g31080.1 68414.m03805 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 355

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 20  YASPSRRKM---DTKGEGEEMTYPHICFMVDNFDEIR 53
           Y SP R  +   + +G GEE  Y ++ + VD+ +++R
Sbjct: 261 YFSPERNTLLSVEIQGVGEEWFYHNVYYFVDHVEDLR 297


>At5g50990.1 68418.m06322 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 511

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 76  IHRFKKTIKEHLCNKAYYKVNDHLEDCTK 104
           IHRFK     H+  KA YKV + L   TK
Sbjct: 388 IHRFKAGDTSHIETKAIYKVLEGLIQKTK 416


>At3g12145.1 68416.m01513 polygalacturonase inhibitor, putative /
           leucine-rich repeat protein (FLR1) similar to
           Swiss-Prot:Q05091 polygalacturonase inhibitor precursor
           (Polygalacturonase-inhibiting protein) [Pyrus communis];
           identical to leucine-rich repeat protein FLR1 (FLR1)
           cDNA NCBI_gi:7637422; contains Pfam domain  PF00560
           Leucine Rich Repeat
          Length = 164

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 63  LYNKIPQDVQNLHIHRFKKTIKEHLCNK 90
           +Y KIP  +  LH+  F  +   HLC K
Sbjct: 109 IYGKIPPALTKLHLEHFNVS-DNHLCGK 135


>At2g38170.3 68415.m04686 calcium exchanger (CAX1) identical to high
           affinity calcium antiporter CAX1 [Arabidopsis thaliana]
           gi|9256741|gb|AAB05913, except a possible frameshift at
           base 58008. Sequence has been confirmed with 5
           sequencing reads.; Ca2+:Cation Antiporter (CaCA) Family
           member PMID:11500563
          Length = 475

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 42  ICFMVDNFDEIRNSFGCLSVRLYNKIPQDVQNLHI 76
           ICF VD   +    F C+ + L  K   +  N HI
Sbjct: 428 ICFFVDKLPQSELVFKCICMLLLGKTIIEAYNTHI 462


>At5g16900.1 68418.m01981 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 866

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 23  PSRRKMDTKGEGEEMTYPHICFMVDNFDEI 52
           PSR  +  + +   +TY  I  M +NF+ +
Sbjct: 549 PSRANLSLENKKRRITYSEILLMTNNFERV 578


>At5g12110.1 68418.m01422 elongation factor 1B alpha-subunit 1
          (eEF1Balpha1) identical to elongation factor 1B
          alpha-subunit [Arabidopsis thaliana] GI:6686819
          Length = 228

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 73 NLHIHRFKKTIKEHLCNKAY 92
          +LH  R  KT++EHL  K Y
Sbjct: 7  DLHTERGLKTLEEHLAGKTY 26


>At4g36900.1 68417.m05231 AP2 domain-containing protein RAP2.10
           (RAP2.10) Identical to GP:2632063 and GP:7270639
           [Arabidopsis thaliana]; identical to cDNA TINY-like
           protein GI:2632062
          Length = 196

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 75  HIHRFKKTIKEHLCNKAYYKVNDHLEDCTKWE 106
           H H+ ++   +++ N + Y++ND L +C+  E
Sbjct: 139 HHHQHQRGNHDYVDNHSDYRINDDLMECSSKE 170


>At3g14310.1 68416.m01810 pectinesterase family protein contains
           Pfam profiles: PF01095 pectinesterase, PF04043 plant
           invertase/pectin methylesterase inhibitor ;similar to
           pectin methylesterase GB:Q42534 from [Arabidopsis
           thaliana]
          Length = 592

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/22 (36%), Positives = 18/22 (81%)

Query: 65  NKIPQDVQNLHIHRFKKTIKEH 86
           +++ + V++LH++  KKT++EH
Sbjct: 139 DELHETVEDLHLYPTKKTLREH 160


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.135    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,416
Number of Sequences: 28952
Number of extensions: 98434
Number of successful extensions: 201
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 12
length of query: 106
length of database: 12,070,560
effective HSP length: 71
effective length of query: 35
effective length of database: 10,014,968
effective search space: 350523880
effective search space used: 350523880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)