Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001087-TA|BGIBMGA001087-PA|undefined
         (79 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     27   0.031
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    24   0.17 
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   0.39 
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   0.39 
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   0.39 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   1.6  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   2.1  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    20   2.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    19   6.3  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    19   8.3  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 26.6 bits (56), Expect = 0.031
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 2   IVTFADSGFVVLQGTTYWTDLFVRHFLFQEEQAIDCDDLL---FFVRKRHVKGSSRYLPK 58
           +VT+A   F  +       D++  HF       +DCD+     + V     KG+    P 
Sbjct: 321 LVTYAGERFDFIVTADQPQDVYWMHF----RGLMDCDERFTRAYQVAVLEYKGTQTNYPS 376

Query: 59  YEVSYQDHRR 68
           YE +Y + RR
Sbjct: 377 YEPTYDNSRR 386


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 24.2 bits (50), Expect = 0.17
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 51  GSSRYLPKYEVSYQDHRR--LRRSFWH 75
           G +R   KY V Y DH+R  L + F++
Sbjct: 151 GKTRTKDKYRVVYTDHQRVELEKEFYY 177


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu
          protein.
          Length = 322

 Score = 23.0 bits (47), Expect = 0.39
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 14 QGTTYWTDLFVRHFLFQEEQAIDCD 38
          Q + YWT+ F +++      A DCD
Sbjct: 6  QFSDYWTNSFYQNYKTNPFLASDCD 30


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
          transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.0 bits (47), Expect = 0.39
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 14 QGTTYWTDLFVRHFLFQEEQAIDCD 38
          Q + YWT+ F +++      A DCD
Sbjct: 6  QFSDYWTNSFYQNYKTNPFLASDCD 30


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.0 bits (47), Expect = 0.39
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 14 QGTTYWTDLFVRHFLFQEEQAIDCD 38
          Q + YWT+ F +++      A DCD
Sbjct: 6  QFSDYWTNSFYQNYKTNPFLASDCD 30


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 1.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 4   TFADSGFVVLQGTTYWTDLFVRHFL 28
           T  D+  +VL GT+  ++ F RH +
Sbjct: 250 TCRDNRLLVLAGTSSPSNRFTRHLI 274


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory
          receptor candidate 34 protein.
          Length = 324

 Score = 20.6 bits (41), Expect = 2.1
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 3/22 (13%)

Query: 18 YWTDLFVRHFLFQEEQAIDCDD 39
          +WT LF R   FQ+    +CD+
Sbjct: 71 FWTILFSRSDFFQQ---FECDN 89


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 20.2 bits (40), Expect = 2.7
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 51  GSSRYLPKYEVSYQDHRR--LRRSFWHIEK 78
           G +R   KY V Y D +R  L + F  + K
Sbjct: 151 GKTRTKDKYRVVYTDLQRIELEKEFTFVSK 180


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 19.0 bits (37), Expect = 6.3
 Identities = 9/21 (42%), Positives = 10/21 (47%)

Query: 51   GSSRYLPKYEVSYQDHRRLRR 71
            G   YL    VSY D   +RR
Sbjct: 2625 GPYAYLSNQWVSYDDIAEIRR 2645


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory
          receptor candidate 13 protein.
          Length = 390

 Score = 18.6 bits (36), Expect = 8.3
 Identities = 5/13 (38%), Positives = 9/13 (69%)

Query: 28 LFQEEQAIDCDDL 40
          L +  + +DCDD+
Sbjct: 21 LLEGRRVVDCDDV 33


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.331    0.142    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,958
Number of Sequences: 317
Number of extensions: 651
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 79
length of database: 114,650
effective HSP length: 46
effective length of query: 33
effective length of database: 100,068
effective search space:  3302244
effective search space used:  3302244
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (20.0 bits)
S2: 36 (18.6 bits)