Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001087-TA|BGIBMGA001087-PA|undefined
         (79 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34169| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_14710| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.7  
SB_19877| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_1933| Best HMM Match : PI3_PI4_kinase (HMM E-Value=4.06377e-44)     25   8.6  

>SB_34169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 31 EEQAIDCDD----LLFFVRKRHVKGSSRYLPKYEVSYQDHRRLRRSFWHIEK 78
          ++  +DCDD    +L+ + + HV+G  R + K   +    R +   FW  EK
Sbjct: 33 DDDDVDCDDTNDNVLYLIDQCHVEGLFRSVFKIVDTVVTTRIVNGHFWFCEK 84


>SB_14710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/46 (26%), Positives = 26/46 (56%)

Query: 29 FQEEQAIDCDDLLFFVRKRHVKGSSRYLPKYEVSYQDHRRLRRSFW 74
          +++ +A DC   +F     H++G++R L K      +HR + ++F+
Sbjct: 33 YRKIKAADCLKSVFENTVSHMQGNNRKLHKIRGKINNHRIIDKNFF 78


>SB_19877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 21 DLFVRHFLFQEEQAIDCDDLLFFVRKRHVKGSSRYLPKYEVSYQDHRRLRRSFW 74
          D  +RHF F+  +A+   D     +++ V  S  YL   + + Q H +L  S+W
Sbjct: 44 DQVLRHFRFERNRALLHSDTALMPKRKQVWSSWNYLS--DRTDQQH-QLCVSYW 94


>SB_1933| Best HMM Match : PI3_PI4_kinase (HMM E-Value=4.06377e-44)
          Length = 915

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 21  DLFVRHFLFQEEQAIDCDDLLFF------VRKRHVKGSSRYLPKYEVSYQDHRRLRR 71
           D F+RH L   ++  + D L  F      VR R +KGS   L   +  Y+ H   RR
Sbjct: 551 DTFLRHLLMMPQEISESDVLYTFLHPIPEVRARVIKGSQGALLS-DARYRSHVIWRR 606


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.331    0.142    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,128
Number of Sequences: 59808
Number of extensions: 88499
Number of successful extensions: 237
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 4
length of query: 79
length of database: 16,821,457
effective HSP length: 57
effective length of query: 22
effective length of database: 13,412,401
effective search space: 295072822
effective search space used: 295072822
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 52 (25.0 bits)