Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001087-TA|BGIBMGA001087-PA|undefined
(79 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 26 0.69
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 1.6
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 23 3.7
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 23 4.8
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 23 4.8
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 23 6.4
SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S... 23 6.4
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 22 8.5
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 22 8.5
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 22 8.5
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom... 22 8.5
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 25.8 bits (54), Expect = 0.69
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 39 DLLFFVRKRHVKGSSRYLPKYEVSYQDHRRLRRSFW 74
+L+F V K + G +Y Y VS R++ R +W
Sbjct: 281 ELMFEVAKLRLHGMYKYPRNYTVSDVLFRKVSRQYW 316
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 24.6 bits (51), Expect = 1.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 55 YLPKYEVSYQDHRRLRRSFWHI 76
Y KYE + Q+ RL+RS+ H+
Sbjct: 415 YKQKYEQTCQEVERLQRSYNHV 436
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 23.4 bits (48), Expect = 3.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 15 GTTYWTDLFVRHFLFQEEQAIDCDDLLFFVRKRHVKGSSR 54
GT TD+ + +F +E DL +R RHV+ + +
Sbjct: 1763 GTICKTDIMIMENVFYDECPSRIFDLKGSMRNRHVESTGK 1802
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 23.0 bits (47), Expect = 4.8
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 1 MIVTFADSGFVVLQGTTYWT-DLFVRHFLFQEEQAIDCDDLL 41
+++ FA++GF ++ WT DL V + F+ + D LL
Sbjct: 631 LLIAFANNGFAFHPKSSSWTYDLPVINRSFEALSSYDIPPLL 672
>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 320
Score = 23.0 bits (47), Expect = 4.8
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 56 LPKYEVSYQDHRRLRRSFWHIEKS 79
LPK + Y+ S WH EK+
Sbjct: 286 LPKQSILYEIRLFAMSSLWHYEKN 309
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 22.6 bits (46), Expect = 6.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 21 DLFVRHFLFQEEQAIDCDDLLFF 43
D+ + F QE++ + DDLL +
Sbjct: 1072 DIMLSQFDLQEKKVLSSDDLLLY 1094
>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
Idi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 227
Score = 22.6 bits (46), Expect = 6.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 15 GTTYWTDLFVRHFLFQEEQAID 36
G T W L HF+F+ Q +D
Sbjct: 193 GFTPWFKLICEHFMFKWWQDVD 214
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 22.2 bits (45), Expect = 8.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 40 LLFFVRKRHVKGSSRYLPKYEVSYQDHRRLRR 71
+L F RK +K S+ K SY+++ +LRR
Sbjct: 665 ILGFSRKSSLKRSTVLSKKSHSSYKENFQLRR 696
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 22.2 bits (45), Expect = 8.5
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 13 LQGTTYWTDLFVRHFLFQEEQAIDC--DDLLFFVRKRHVKGSSRYLPKYEVSYQDHRRLR 70
LQG LF H + + A DD+ +RK + KGS L ++ ++ +
Sbjct: 1436 LQGENKNYVLFCIHHVLYDAWAFQLIMDDINHLLRKENPKGSQSMLKFISYLHRYNKNVD 1495
Query: 71 RSFW 74
W
Sbjct: 1496 LEIW 1499
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 22.2 bits (45), Expect = 8.5
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 46 KRHVKGSSRYLPKYEVSYQDHR 67
K+H G++ Y+ K ++Y +H+
Sbjct: 459 KKHASGNNGYMLKDFINYLNHQ 480
>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 22.2 bits (45), Expect = 8.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 26 HFLFQEEQAIDC 37
H + QEEQA DC
Sbjct: 157 HKILQEEQAADC 168
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.331 0.142 0.456
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 362,487
Number of Sequences: 5004
Number of extensions: 12708
Number of successful extensions: 33
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 11
length of query: 79
length of database: 2,362,478
effective HSP length: 59
effective length of query: 20
effective length of database: 2,067,242
effective search space: 41344840
effective search space used: 41344840
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 45 (22.2 bits)
- SilkBase 1999-2023 -