Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001087-TA|BGIBMGA001087-PA|undefined
(79 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 29 0.36
10_08_0910 - 21495633-21495923,21496155-21496430,21496754-214969... 29 0.36
02_05_0973 + 33209385-33209456,33210517-33210721,33210810-332109... 29 0.36
12_01_1069 - 11060045-11060262,11060404-11060545,11060624-110607... 28 1.1
08_02_0028 - 11371547-11371657,11372326-11372518,11372738-113728... 27 1.9
10_02_0078 - 4992019-4992594,4993156-4993248,4995984-4996202,499... 26 3.3
01_06_1199 + 35355690-35355732,35355793-35355930,35356366-353563... 26 3.3
06_03_0734 - 23980576-23980671,23980799-23981338,23981493-239817... 25 5.8
06_03_0832 + 25190755-25190960,25191869-25191997,25192079-251923... 25 7.7
05_05_0179 + 23022985-23023190,23024099-23024227,23024309-230245... 25 7.7
03_02_0226 - 6569657-6570388,6570461-6570748,6570846-6571303,657... 25 7.7
>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 29.5 bits (63), Expect = 0.36
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 23 FVRHFLFQEEQAIDCDDLLFFVRKRHVKGSSRYLPKYEVSYQD 65
F HF+F +EQ +D DLLF + ++ + P +++D
Sbjct: 2219 FGHHFVFSKEQKLDWVDLLFLTTRPVEDRTTEFWPTKPPTFRD 2261
>10_08_0910 -
21495633-21495923,21496155-21496430,21496754-21496999,
21497187-21497296,21498228-21498387
Length = 360
Score = 29.5 bits (63), Expect = 0.36
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 23 FVRHFLFQEEQAIDCDDLLFFVRKRHVKGSSRYL 56
F HF F +EQ +D DLLF V + + S+ +L
Sbjct: 131 FGHHFFFPKEQKLDWADLLFLVTRPVEERSNGFL 164
>02_05_0973 +
33209385-33209456,33210517-33210721,33210810-33210975,
33211268-33211490,33211928-33212004,33212090-33212183,
33212202-33212271,33212350-33212447,33212565-33212692,
33212772-33212900,33213013-33213421,33213984-33214105,
33214224-33214313,33215092-33215304,33215453-33215584,
33216258-33216333,33216403-33216420
Length = 773
Score = 29.5 bits (63), Expect = 0.36
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 5 FADSGFVVLQGTTYWTDLFVRHFLFQEEQAIDCDDLLFFV---RKRHVKGSSRYLPK 58
F G G+T WT V F Q++ +I D++F + R RH G +RYL +
Sbjct: 197 FLTQGIRNFLGSTLWTVALVYGFFKQDKISISGKDIMFTLIARRSRHFAG-TRYLKR 252
>12_01_1069 -
11060045-11060262,11060404-11060545,11060624-11060776,
11060942-11061013,11062774-11063082,11063323-11063378,
11066436-11066533,11066616-11066700,11066800-11067001,
11067471-11067542,11069555-11069624,11071829-11072038,
11072337-11072609,11073912-11074183,11075354-11075557
Length = 811
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 23 FVRHFLFQEEQAIDCDDLLFFVRKRHVKGSSRYLPKYEVSYQDHR 67
FVRH +EE D + VR H++ S K SY D+R
Sbjct: 403 FVRHEADEEESDTSDDIVPVVVRPGHIRFESAGKKKINQSYPDYR 447
>08_02_0028 -
11371547-11371657,11372326-11372518,11372738-11372814,
11373498-11373608,11374533-11374659,11374745-11375022
Length = 298
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 47 RHVKGSS-RYLPKYEVSYQDHRRLRRSFWH 75
+ V+GSS R PK+ V ++D RS+WH
Sbjct: 36 KRVRGSSERSAPKFGVLFEDVLEECRSWWH 65
>10_02_0078 -
4992019-4992594,4993156-4993248,4995984-4996202,
4996282-4996345,4996429-4996485,4996573-4996671,
4997296-4997327
Length = 379
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 14 QGTTYWTDLFVRHFLFQEEQAIDCDDLLFFVR 45
+GT+Y + F R ++ Q E IDC L VR
Sbjct: 84 KGTSYVYETFFRPYISQYENDIDCSILDLRVR 115
>01_06_1199 +
35355690-35355732,35355793-35355930,35356366-35356389,
35356450-35356587,35356974-35357056,35358881-35358922,
35359151-35359231,35359319-35359414,35359530-35359736,
35359810-35359963,35360170-35360373,35361037-35361921,
35362025-35362071
Length = 713
Score = 26.2 bits (55), Expect = 3.3
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 24 VRHFLFQEEQAIDCDDLLFFVRKRHVKGSSRYLPKYEVSYQDHRRLRRSFWHIEK 78
VR + +E + D L F R++ K + + YE+ ++R++R FW E+
Sbjct: 354 VRTSINRETSSNDMMQALEFFRRQQEKDPNFF---YEIDLDENRKVRNLFWTDEQ 405
>06_03_0734 -
23980576-23980671,23980799-23981338,23981493-23981714,
23981791-23982144,23982460-23982546
Length = 432
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 46 KRHVKGSSRYLPKYEVSYQDHRRLRRS 72
K ++G R LP+ +V+ DHR RS
Sbjct: 373 KSRLRGGGRSLPRRKVASSDHRLHARS 399
>06_03_0832 +
25190755-25190960,25191869-25191997,25192079-25192301,
25192447-25192702,25193228-25193685,25193783-25194070,
25194143-25194874
Length = 763
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 19 WTDLFVRHFLFQEEQAIDCDDLLFFVRKRHVKGSSR---YLPKYEVSYQD 65
W + R F F + + V K++VK SS + +YE Y D
Sbjct: 361 WAPAYFREFFFARMSTTQRSESMNHVLKKYVKPSSSLHGFAKRYENFYND 410
>05_05_0179 +
23022985-23023190,23024099-23024227,23024309-23024531,
23024674-23024929,23025455-23025912,23026009-23026296,
23026369-23027100
Length = 763
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 19 WTDLFVRHFLFQEEQAIDCDDLLFFVRKRHVKGSSR---YLPKYEVSYQD 65
W + R F F + + V K++VK SS + +YE Y D
Sbjct: 361 WAPAYFREFFFARMSTTQRSESMNHVLKKYVKPSSSLHGFAKRYENFYND 410
>03_02_0226 -
6569657-6570388,6570461-6570748,6570846-6571303,
6571694-6571828,6571829-6572084,6572229-6572451,
6572533-6572661,6573570-6573775
Length = 808
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 19 WTDLFVRHFLFQEEQAIDCDDLLFFVRKRHVKGSSR---YLPKYEVSYQD 65
W + R F F + + V K++VK SS + +YE Y D
Sbjct: 406 WAPAYFREFFFARMSTTQRSESMNHVLKKYVKPSSSLHGFAKRYENFYND 455
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.331 0.142 0.456
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,233,088
Number of Sequences: 37544
Number of extensions: 75867
Number of successful extensions: 151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 145
Number of HSP's gapped (non-prelim): 11
length of query: 79
length of database: 14,793,348
effective HSP length: 58
effective length of query: 21
effective length of database: 12,615,796
effective search space: 264931716
effective search space used: 264931716
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 52 (25.0 bits)
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