GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001087-TA|BGIBMGA001087-PA|undefined
         (79 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82269-5|CAH60772.1|  618|Caenorhabditis elegans Hypothetical pr...    27   1.2  
Z82269-4|CAB70200.2|  633|Caenorhabditis elegans Hypothetical pr...    27   1.2  
AL021487-15|CAH60766.1|  618|Caenorhabditis elegans Hypothetical...    27   1.2  
AL021487-14|CAA16360.3|  633|Caenorhabditis elegans Hypothetical...    27   1.2  
Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical pr...    25   4.8  
Z47808-7|CAA87771.2|  934|Caenorhabditis elegans Hypothetical pr...    25   4.8  
Z81042-3|CAB02794.2|  660|Caenorhabditis elegans Hypothetical pr...    25   8.4  
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    25   8.4  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    25   8.4  
AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    25   8.4  

>Z82269-5|CAH60772.1|  618|Caenorhabditis elegans Hypothetical
          protein Y45F10B.13b protein.
          Length = 618

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 8/24 (33%), Positives = 17/24 (70%)

Query: 15 GTTYWTDLFVRHFLFQEEQAIDCD 38
          GT +WT +++ ++LF+ +Q   C+
Sbjct: 13 GTVFWTTVYLLYYLFKGKQEWKCE 36


>Z82269-4|CAB70200.2|  633|Caenorhabditis elegans Hypothetical
          protein Y45F10B.13a protein.
          Length = 633

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 8/24 (33%), Positives = 17/24 (70%)

Query: 15 GTTYWTDLFVRHFLFQEEQAIDCD 38
          GT +WT +++ ++LF+ +Q   C+
Sbjct: 13 GTVFWTTVYLLYYLFKGKQEWKCE 36


>AL021487-15|CAH60766.1|  618|Caenorhabditis elegans Hypothetical
          protein Y45F10B.13b protein.
          Length = 618

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 8/24 (33%), Positives = 17/24 (70%)

Query: 15 GTTYWTDLFVRHFLFQEEQAIDCD 38
          GT +WT +++ ++LF+ +Q   C+
Sbjct: 13 GTVFWTTVYLLYYLFKGKQEWKCE 36


>AL021487-14|CAA16360.3|  633|Caenorhabditis elegans Hypothetical
          protein Y45F10B.13a protein.
          Length = 633

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 8/24 (33%), Positives = 17/24 (70%)

Query: 15 GTTYWTDLFVRHFLFQEEQAIDCD 38
          GT +WT +++ ++LF+ +Q   C+
Sbjct: 13 GTVFWTTVYLLYYLFKGKQEWKCE 36


>Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical
          protein T09E8.2 protein.
          Length = 954

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 15/52 (28%), Positives = 23/52 (44%)

Query: 14 QGTTYWTDLFVRHFLFQEEQAIDCDDLLFFVRKRHVKGSSRYLPKYEVSYQD 65
          QGT+Y T     H    ++Q+ D      F RKR    S+ ++   +  Y D
Sbjct: 44 QGTSYRTPFMPSHLGLIQDQSPDLTMKDLFNRKRSRPQSTGFIDHSQARYYD 95


>Z47808-7|CAA87771.2|  934|Caenorhabditis elegans Hypothetical
           protein D2013.5 protein.
          Length = 934

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 31  EEQAIDCDDLLFFVRKRHVKGSSRYLPKYEVSYQDHRRLRR 71
           E Q IDC  ++ F R + +   +    + +++  +HRRL +
Sbjct: 841 EGQDIDCQTIVLFYRIQKMVNLTCNALRQQITNTEHRRLEK 881


>Z81042-3|CAB02794.2|  660|Caenorhabditis elegans Hypothetical
           protein C27H6.3 protein.
          Length = 660

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 27  FLFQEEQAIDCDDLLFFVRKRHVKGSS 53
           ++ +EE A+  +D+  F  K++V G+S
Sbjct: 169 YITEEEHAVSVEDIPDFASKKNVYGTS 195


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
           protein F52C9.1a protein.
          Length = 1336

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 27  FLFQEEQAI-DCDDLLFFVRKR 47
           FLF  EQ   DCD+  FFV  R
Sbjct: 612 FLFNTEQDFPDCDEFSFFVSVR 633


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
           protein F52C9.1b protein.
          Length = 1331

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 27  FLFQEEQAI-DCDDLLFFVRKR 47
           FLF  EQ   DCD+  FFV  R
Sbjct: 612 FLFNTEQDFPDCDEFSFFVSVR 633


>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 7/26 (26%), Positives = 19/26 (73%)

Query: 49  VKGSSRYLPKYEVSYQDHRRLRRSFW 74
           V+   + + +YE++ ++H+R++R F+
Sbjct: 516 VEEHKKLVEEYEMAMEEHKRVKRQFF 541


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.331    0.142    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,956,896
Number of Sequences: 27539
Number of extensions: 68399
Number of successful extensions: 173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 165
Number of HSP's gapped (non-prelim): 10
length of query: 79
length of database: 12,573,161
effective HSP length: 59
effective length of query: 20
effective length of database: 10,948,360
effective search space: 218967200
effective search space used: 218967200
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 51 (24.6 bits)