GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001087-TA|BGIBMGA001087-PA|undefined
         (79 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    20   3.2  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        19   7.3  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
          protein.
          Length = 484

 Score = 20.2 bits (40), Expect = 3.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)

Query: 11 VVLQGTTYWTDLFVRHF 27
          +VL G TYW   F   F
Sbjct: 72 IVLGGLTYWAFGFAMSF 88


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 19.0 bits (37), Expect = 7.3
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 44  VRKRHVKGSSRYLPKYEVSYQDHR 67
           + ++      + LP Y   YQD R
Sbjct: 283 IARQMTTSRKKVLPYYWYKYQDRR 306


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.331    0.142    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,315
Number of Sequences: 429
Number of extensions: 746
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 79
length of database: 140,377
effective HSP length: 47
effective length of query: 32
effective length of database: 120,214
effective search space:  3846848
effective search space used:  3846848
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (20.0 bits)
S2: 36 (18.6 bits)