Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001087-TA|BGIBMGA001087-PA|undefined
(79 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11520.1 68416.m01404 cyclin, putative (CYC2) similar to cycl... 31 0.073
At4g34160.1 68417.m04847 cyclin delta-3 (CYCD3) identical to SP|... 29 0.51
At5g06150.1 68418.m00684 cyclin 1b (CYC1b) identical to cyclin [... 28 0.68
At1g16330.1 68414.m01954 cyclin family protein similar to SP|P25... 27 2.1
At1g59520.3 68414.m06686 expressed protein (CW7) 26 2.7
At1g59520.2 68414.m06684 expressed protein (CW7) 26 2.7
At1g59520.1 68414.m06685 expressed protein (CW7) 26 2.7
At4g25310.1 68417.m03640 oxidoreductase, 2OG-Fe(II) oxygenase fa... 25 4.8
At5g15290.1 68418.m01791 integral membrane family protein contai... 25 6.3
At4g37490.1 68417.m05305 G2/mitotic-specific cyclin (CYC1) / B-l... 25 6.3
At5g29020.1 68418.m03592 hypothetical protein 25 8.4
At3g45140.1 68416.m04872 lipoxygenase (LOX2) identical to SP|P38418 25 8.4
At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contai... 25 8.4
>At3g11520.1 68416.m01404 cyclin, putative (CYC2) similar to cyclin
[Arabidopsis thaliana] GI:1360646; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain; identical to cDNA cyclin box
(cyc2) partial cds GI:456019
Length = 414
Score = 31.5 bits (68), Expect = 0.073
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 13 LQGTTYWTDLFVRHFLFQEEQAIDCDDLLFFVRKRHVKGSSR-YLPKY 59
L T WTD H + E Q +DC LL F+ + + R L KY
Sbjct: 345 LNKTPTWTDTLKFHTGYSESQLMDCSKLLAFIHSKAGESKLRGVLKKY 392
>At4g34160.1 68417.m04847 cyclin delta-3 (CYCD3) identical to
SP|P42753 Cyclin delta-3 {Arabidopsis thaliana}
Length = 376
Score = 28.7 bits (61), Expect = 0.51
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 6 ADSGFVVLQGTTYWTDL-FVRHFLFQEEQAIDC-DDLLFFVRKRHVKG 51
+ S FVVLQ +W D V F +EEQ + C DD+ ++ G
Sbjct: 45 SSSPFVVLQQDLFWEDEDLVTLFSKEEEQGLSCLDDVYLSTDRKEAVG 92
>At5g06150.1 68418.m00684 cyclin 1b (CYC1b) identical to cyclin
[Arabidopsis thaliana] GI:1360646
Length = 445
Score = 28.3 bits (60), Expect = 0.68
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 19 WTDLFVRHFLFQEEQAIDCDDLLFFVRKRHVKGSSRYLPKYE 60
WTD H + E + +DC LL F+ R G SR Y+
Sbjct: 374 WTDTLQFHTGYTESEIMDCSKLLAFLHSR--CGESRLRAVYK 413
>At1g16330.1 68414.m01954 cyclin family protein similar to SP|P25011
G2/mitotic-specific cyclin S13-6 (B-like cyclin)
{Glycine max}; contains Pfam profiles PF00134: Cyclin,
N-terminal domain, PF02984: Cyclin, C-terminal domain
Length = 396
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 13 LQGTTYWTDLFVRHFLFQEEQAIDCDDLLFFVRKRHVKGSSR 54
L T WT L H + Q DC D++ K G+ R
Sbjct: 330 LHMTPVWTSLLNNHTHYNVSQMKDCSDMILRFHKAAKTGNLR 371
>At1g59520.3 68414.m06686 expressed protein (CW7)
Length = 388
Score = 26.2 bits (55), Expect = 2.7
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 16 TTYWTDLFVRHFL-FQEEQAIDCDDLLFFVRKRHVK 50
+ +W +F +F+ E + DDLLFFVRK K
Sbjct: 42 SNFWHGVFDVYFVRCMESRRRQDDDLLFFVRKLSCK 77
>At1g59520.2 68414.m06684 expressed protein (CW7)
Length = 319
Score = 26.2 bits (55), Expect = 2.7
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 16 TTYWTDLFVRHFL-FQEEQAIDCDDLLFFVRKRHVK 50
+ +W +F +F+ E + DDLLFFVRK K
Sbjct: 42 SNFWHGVFDVYFVRCMESRRRQDDDLLFFVRKLSCK 77
>At1g59520.1 68414.m06685 expressed protein (CW7)
Length = 388
Score = 26.2 bits (55), Expect = 2.7
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 16 TTYWTDLFVRHFL-FQEEQAIDCDDLLFFVRKRHVK 50
+ +W +F +F+ E + DDLLFFVRK K
Sbjct: 42 SNFWHGVFDVYFVRCMESRRRQDDDLLFFVRKLSCK 77
>At4g25310.1 68417.m03640 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to flavonol synthase [Petunia x
hybrida][GI:311658], [Solanum tuberosum][GI:1039356];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 353
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 23 FVRHFLFQEEQAIDCDDLLFFVRKRHVKGSSRYLPKYEVSYQD 65
F + F+F EEQ +D D+ F + PK + ++D
Sbjct: 123 FGQAFVFSEEQKLDWADVFFLTMQPVPLRKPHLFPKLPLPFRD 165
>At5g15290.1 68418.m01791 integral membrane family protein
contains TIGRFAM TIGR01569 : plant integral membrane
protein TIGR01569; contains Pfam PF04535 : Domain of
unknown function (DUF588) contains plant integral
membrane protein domain, TIGR01569
Length = 187
Score = 25.0 bits (52), Expect = 6.3
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 2 IVTFADS-GFVVLQGTTYWTDLFVRHFLFQEEQAIDCDDLLFFV 44
IV F ++ G +L GTT+ T F F+ + + D L FFV
Sbjct: 34 IVAFFNTIGSAILMGTTHETLPFFTQFIRFQAEYNDLPALTFFV 77
>At4g37490.1 68417.m05305 G2/mitotic-specific cyclin (CYC1) / B-like
cyclin (CYC1) identical to SP|P30183 G2/mitotic-specific
cyclin (B-like cyclin) {Arabidopsis thaliana}
Length = 428
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 13 LQGTTYWTDLFVRHFLFQEEQAIDCDDLLFFVR-KRHVKGS 52
L+ WT H + E Q +DC LL + + K+ +GS
Sbjct: 352 LRQVPIWTSTLKHHTGYSETQLMDCAKLLAYQQWKQQEEGS 392
>At5g29020.1 68418.m03592 hypothetical protein
Length = 847
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 7 DSGFVVLQGTTYWTDLFVRHFLFQEEQAIDCDDLL 41
D+G +++G D + HF F + + DDLL
Sbjct: 453 DTGRKIIEGFLSKDDAYTDHFFFVALEDVILDDLL 487
>At3g45140.1 68416.m04872 lipoxygenase (LOX2) identical to SP|P38418
Length = 896
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 5 FADSGFVVLQGTTYWTDLFVRHFLFQEEQAIDCDDLL 41
FA+ G ++ W +V+H+ + +E+ I D+ L
Sbjct: 666 FANDGLILWDAIKEWVTDYVKHY-YPDEELITSDEEL 701
>At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contains
weak similarity to Ubiquitin-protein ligase E3 Mdm2 (EC
6.3.2.-) (p53-binding protein Mdm2) (Oncoprotein Mdm2)
(Double minute 2 protein) (Swiss-Prot:P23804) [Mus
musculus]
Length = 785
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 17 TYWTDLFVRHFLFQEEQAIDCDDLLFFVRKRHVKG 51
TYW DL +L D DD+ + +R V G
Sbjct: 578 TYWEDLRKSRYLEVMNTKSDKDDICRLLERRTVSG 612
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.331 0.142 0.456
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,845,530
Number of Sequences: 28952
Number of extensions: 62997
Number of successful extensions: 153
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 13
length of query: 79
length of database: 12,070,560
effective HSP length: 58
effective length of query: 21
effective length of database: 10,391,344
effective search space: 218218224
effective search space used: 218218224
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 51 (24.6 bits)
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