Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001086-TA|BGIBMGA001086-PA|undefined
         (64 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   0.23 
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    26   0.71 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   0.94 
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    25   1.2  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    25   1.6  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    23   3.8  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    23   5.0  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    23   6.6  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    22   8.8  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    22   8.8  

>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 27.5 bits (58), Expect = 0.23
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 3   LGLGGCTFLKNATMLEQLLEEINFQRTKEMRQLMK 37
           L LG CT + +  MLE+ L+E N +  + +R  M+
Sbjct: 962 LWLGTCTDIHDHKMLEEKLQESNIEAQRIVRSKMQ 996


>SPBC577.05c |rec27|mug41|meiotic recombination protein
          Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 25.8 bits (54), Expect = 0.71
 Identities = 8/33 (24%), Positives = 22/33 (66%)

Query: 10 FLKNATMLEQLLEEINFQRTKEMRQLMKDEKDI 42
          F+K+ + ++Q ++E   Q+  +++QL +++  I
Sbjct: 64 FIKDVSQVQQKIKEFEIQKANQIKQLNEEKLSI 96


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 0.94
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 12  KNATMLEQLLEEINFQRTKEMRQLMKDEKDIVVYNSLLVWKKV 54
           + A +L +  E+  F R  +    +   K + V  SLL W+KV
Sbjct: 70  QEAILLLKKGEDNEFDRCIQALVALASSKPVAVIESLLCWRKV 112


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 8/52 (15%)

Query: 20  LLEEINFQRTKEMRQLM------KDEKDIVV--YNSLLVWKKVLFNQSSVIL 63
           LLE +N +  K++ Q        +   D+VV  YNSLL  K++  N  SV++
Sbjct: 153 LLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVV 204


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
          protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 10 FLKNATMLEQLLEEINFQRTKEMRQLMK 37
          ++  +T+LE +LEE   +   E R+L+K
Sbjct: 20 YITYSTLLELILEEARIKDIDEQRELIK 47


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 23  EINFQRTKEMRQLMKDEKDIVVYNSLLV 50
           E NFQRT E  Q  K  K + +++  L+
Sbjct: 107 EANFQRTNEKIQRNKSIKRVKLFHGNLI 134


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 31  EMRQLMKDEKDIVVYNS 47
           E  QL+  EKD+++Y+S
Sbjct: 205 ENAQLLVTEKDVIIYSS 221


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 13  NATMLEQLLEEINFQRTKEMRQLMKDEKDIV 43
           +A   ++LL    FQR  E +Q +  E DI+
Sbjct: 667 DAVQADELLNIRQFQRVIEEKQDLNFESDII 697


>SPBC4B4.02c |nca2||mitochondrial protein Nca2
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 573

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 5  LGGCTFLKNATMLEQLLEE 23
          LG C+   +  ML+QLLEE
Sbjct: 71 LGRCSAHLHVKMLDQLLEE 89


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 12  KNATMLEQLLEEINFQRTKEMRQLMKDEKDIVVYNSL 48
           +N T  +   E+IN  R K++  LM   K  + Y+ L
Sbjct: 905 QNTTNRQVESEQINIFRPKDILNLMPVIKTCIPYSGL 941


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.136    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 264,012
Number of Sequences: 5004
Number of extensions: 7699
Number of successful extensions: 30
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 10
length of query: 64
length of database: 2,362,478
effective HSP length: 44
effective length of query: 20
effective length of database: 2,142,302
effective search space: 42846040
effective search space used: 42846040
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 45 (22.2 bits)